GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001606-TA|BGIBMGA001606-PA|undefined
         (226 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3 |Schizosaccha...    31   0.18 
SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyc...    29   0.42 
SPAC11D3.03c |||meiotic chromosome segregation protein|Schizosac...    29   0.42 
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    27   2.3  
SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyc...    27   3.0  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    26   3.9  
SPAC644.06c |cdr1|nim1|GIN4 family protein kinase Cdr1|Schizosac...    26   3.9  
SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyc...    25   6.9  

>SPAC16.04 |dus3||tRNA dihydrouridine synthase Dus3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 617

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 21/73 (28%), Positives = 37/73 (50%), Gaps = 7/73 (9%)

Query: 97  YYRHSPLPFYT--DPELFS----YTNRHRSDLHLAEDPIPHYYRYSPLRLCTDPELFSYT 150
           ++R++P+  Y    P L      YT R   +  LA + +  + + S   L   PE F++T
Sbjct: 545 FHRYTPIALYEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFT 604

Query: 151 NRHRSD-LHLAEG 162
            +H+S+ +  AEG
Sbjct: 605 PKHKSNSVEEAEG 617



 Score = 28.7 bits (61), Expect = 0.74
 Identities = 22/73 (30%), Positives = 36/73 (49%), Gaps = 7/73 (9%)

Query: 132 YYRYSPLRL--CTDPELFS----YTNRHRSDLHLAEGPIPNYYRPSPLRLCTDPELFSCT 185
           ++RY+P+ L     P L      YT R   +  LA   + ++ + S   L   PE F+ T
Sbjct: 545 FHRYTPIALYEVQRPRLNDRPPLYTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFT 604

Query: 186 NRHRSD-LHLAEG 197
            +H+S+ +  AEG
Sbjct: 605 PKHKSNSVEEAEG 617



 Score = 28.7 bits (61), Expect = 0.74
 Identities = 16/50 (32%), Positives = 27/50 (54%), Gaps = 1/50 (2%)

Query: 44  YTNRHRSDLHLAMGPISHYYRPSPLRLCTDPELFSYTNRHRSD-LHLAEG 92
           YT R   +  LA   ++ + + S   L   PE F++T +H+S+ +  AEG
Sbjct: 568 YTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFTPKHKSNSVEEAEG 617



 Score = 27.5 bits (58), Expect = 1.7
 Identities = 20/64 (31%), Positives = 30/64 (46%), Gaps = 3/64 (4%)

Query: 58  PISHYYRPSPLRLCTDPELFSYTNRHRSDLHLAEGPIPHYYRHSPLPFYTDPELFSYTNR 117
           PI+ Y    P RL   P L  YT R   +  LA   +  + + S       PE F++T +
Sbjct: 550 PIALYEVQRP-RLNDRPPL--YTARDEMETLLASNKVTDWVKLSEFFLGPTPERFTFTPK 606

Query: 118 HRSD 121
           H+S+
Sbjct: 607 HKSN 610


>SPAC1B3.05 |||CCR4-Not complex subunit Not3/5 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 630

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 9/19 (47%), Positives = 12/19 (63%)

Query: 93  PIPHYYRHSPLPFYTDPEL 111
           P+PHYY   PLP +   E+
Sbjct: 518 PVPHYYPQQPLPLFDSSEM 536



 Score = 25.8 bits (54), Expect = 5.2
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 23  PIPHYYRHSPLQLCTDPEL 41
           P+PHYY   PL L    E+
Sbjct: 518 PVPHYYPQQPLPLFDSSEM 536



 Score = 25.0 bits (52), Expect = 9.1
 Identities = 9/19 (47%), Positives = 11/19 (57%)

Query: 128 PIPHYYRYSPLRLCTDPEL 146
           P+PHYY   PL L    E+
Sbjct: 518 PVPHYYPQQPLPLFDSSEM 536


>SPAC11D3.03c |||meiotic chromosome segregation
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 302

 Score = 29.5 bits (63), Expect = 0.42
 Identities = 13/39 (33%), Positives = 19/39 (48%)

Query: 75  ELFSYTNRHRSDLHLAEGPIPHYYRHSPLPFYTDPELFS 113
           EL S + +     +    P+P YY H   P Y D EL++
Sbjct: 6   ELASSSQKPEKTKYNLPKPLPAYYPHPGSPLYADKELYA 44


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 9/23 (39%), Positives = 15/23 (65%)

Query: 88  HLAEGPIPHYYRHSPLPFYTDPE 110
           H+A+G +P ++  +  PF T PE
Sbjct: 389 HIAKGELPKFHNSTDNPFLTPPE 411


>SPBC19C7.05 |||cell wall organization protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 150

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)

Query: 47  RHRSDLHLAMGPISHYYRPSPLRLCTDP 74
           R+ S +H  M P+S  YRP P    T P
Sbjct: 89  RYNSTIHNPMPPMSQAYRPPPTEPPTVP 116


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 11/24 (45%), Positives = 14/24 (58%)

Query: 10  LATDGSDLHLAEGPIPHYYRHSPL 33
           L TD  DL+L   PIP Y +  P+
Sbjct: 98  LGTDYLDLYLLHSPIPFYEKKIPI 121


>SPAC644.06c |cdr1|nim1|GIN4 family protein kinase
           Cdr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 16/51 (31%), Positives = 23/51 (45%), Gaps = 3/51 (5%)

Query: 82  RHRSDLHLAEGPIPHYYRHSPLPFYTDPELFSYTNRHRSDLHLAEDPIPHY 132
           RH + L L +    H + +  L +  D ELF Y  +H     L+E    HY
Sbjct: 61  RHPNILRLYDVWTDHQHMYLALEYVPDGELFHYIRKHGP---LSEREAAHY 108



 Score = 26.2 bits (55), Expect = 3.9
 Identities = 13/37 (35%), Positives = 17/37 (45%)

Query: 117 RHRSDLHLAEDPIPHYYRYSPLRLCTDPELFSYTNRH 153
           RH + L L +    H + Y  L    D ELF Y  +H
Sbjct: 61  RHPNILRLYDVWTDHQHMYLALEYVPDGELFHYIRKH 97


>SPCC1223.04c |mug76||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 70  LCTDPELFSY-TNRHRSDLHLAEGPIPHYYRHSP 102
           LC +     Y T    ++ HL   PI  Y+ HSP
Sbjct: 159 LCVNTRCLYYDTGSKNTEDHLTLAPIFEYFNHSP 192


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.323    0.140    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,256,429
Number of Sequences: 5004
Number of extensions: 62092
Number of successful extensions: 138
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 105
Number of HSP's gapped (non-prelim): 34
length of query: 226
length of database: 2,362,478
effective HSP length: 70
effective length of query: 156
effective length of database: 2,012,198
effective search space: 313902888
effective search space used: 313902888
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)