Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001606-TA|BGIBMGA001606-PA|undefined
(226 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0347 + 24564589-24565296 30 1.8
12_01_0029 + 248725-248769,248870-249074,250040-250128,250237-25... 29 2.3
11_01_0030 + 233285-233329,233439-233643,234637-234725,234834-23... 29 2.3
02_04_0215 - 20983210-20983293,20983440-20983512,20984072-209841... 29 4.1
10_08_0267 - 16333239-16333820,16333904-16334842,16334920-163351... 28 5.4
03_05_0884 - 28487013-28487271,28487355-28487516,28487594-284878... 27 9.4
>04_04_0347 + 24564589-24565296
Length = 235
Score = 29.9 bits (64), Expect = 1.8
Identities = 25/98 (25%), Positives = 41/98 (41%), Gaps = 15/98 (15%)
Query: 55 AMGPISHYYRPSPLRLCTDPELFSYTNRHRSDLHL--------AEGPIPHYYRHSPLPFY 106
A P H++ P+P + D S+ + H H A P H+ RH+P P +
Sbjct: 70 AQAPEWHHHAPAPAPVRDDKPSPSHHHHHHGHHHHRHATATAPAHAPSSHHDRHAPAPVH 129
Query: 107 TDPELFSYTNR------HRSDLHLAEDPIP-HYYRYSP 137
+ ++ H ++ HLA P P + +YSP
Sbjct: 130 SSWPWPAHAPAPAPAVIHGTNSHLAPAPAPSSHVQYSP 167
>12_01_0029 +
248725-248769,248870-249074,250040-250128,250237-250315,
250429-250556,250764-250862,250953-251061,251301-251380,
251464-251691,251768-251833,251970-252086,252538-252735,
252847-252963,253056-253115,253228-253314,253419-253502,
253623-253757,253837-253899,253979-254083,254174-254286,
254374-254626,254715-254851,254970-255248,255352-256354,
256450-256935,257023-257193,257285-257470,257820-257942,
258024-258134,258225-258395
Length = 1708
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 25 PHYYRHSPLQL-CTDPELFSYTNRHRSDLHLAMGPISHYYRPSPLRLCTDPELFSYTNRH 83
P+ H+ LQ + L +Y N +D LA G SHY RP +LC L+ +H
Sbjct: 586 PNLPEHAFLQTKVLEINLVTYPNV--ADAILANGMFSHYDRPRVAQLCEKAGLYLRALQH 643
Query: 84 RSDL 87
++L
Sbjct: 644 YTEL 647
>11_01_0030 +
233285-233329,233439-233643,234637-234725,234834-234912,
235048-235175,235383-235481,235572-235680,235920-235999,
236083-236310,236387-236452,236589-236705,237142-237339,
237451-237567,237660-237719,237832-237918,238023-238106,
238233-238367,238446-238508,238588-238692,238781-238893,
238981-239233,239322-239458,239577-239855,239958-240960,
241054-241539,241627-241797,241890-242075,242426-242548,
242630-242740,242834-243004
Length = 1708
Score = 29.5 bits (63), Expect = 2.3
Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 3/64 (4%)
Query: 25 PHYYRHSPLQL-CTDPELFSYTNRHRSDLHLAMGPISHYYRPSPLRLCTDPELFSYTNRH 83
P+ H+ LQ + L +Y N +D LA G SHY RP +LC L+ +H
Sbjct: 586 PNLPEHAFLQTKVLEINLVTYPNV--ADAILANGMFSHYDRPRVAQLCEKAGLYLRALQH 643
Query: 84 RSDL 87
++L
Sbjct: 644 YTEL 647
>02_04_0215 -
20983210-20983293,20983440-20983512,20984072-20984159,
20984232-20984388,20984472-20984575,20985045-20985119,
20985144-20985213
Length = 216
Score = 28.7 bits (61), Expect = 4.1
Identities = 21/58 (36%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 103 LPFYTDPELFSYTNRHRSDLHLAEDPIPHYYRYSPLRLCTDPELFSYTNRHRSDLHLA 160
L FYTD E SY R HL +DP YR LC + F N D+ A
Sbjct: 139 LNFYTDVEDLSYLQR-----HLDQDPRSAKYRKLTKELCDVIDDFGLVNFTTLDIQTA 191
>10_08_0267 -
16333239-16333820,16333904-16334842,16334920-16335172,
16336837-16337063,16338189-16339388
Length = 1066
Score = 28.3 bits (60), Expect = 5.4
Identities = 19/39 (48%), Positives = 19/39 (48%), Gaps = 3/39 (7%)
Query: 135 YSPLRLCT-DPELFSYTNRHRSDLHLAEGPIPNYYRPSP 172
Y PLR T PEL S NRH L L P P PSP
Sbjct: 641 YRPLRSPTFSPELHS--NRHHRVLQLRRRPGPQSAAPSP 677
>03_05_0884 -
28487013-28487271,28487355-28487516,28487594-28487802,
28488490-28488630,28488876-28489071,28489207-28489379,
28490095-28490142,28490301-28490378,28490526-28490792,
28491689-28491842,28491928-28492064,28492459-28492536,
28493039-28493216,28493589-28493803,28494063-28494422,
28494497-28494973,28495561-28495665,28495838-28496020,
28496105-28496263,28496937-28497154,28497737-28497905,
28498262-28498568,28498699-28498826,28498902-28499060,
28499194-28499364,28500258-28500376,28500604-28500853,
28501007-28501759
Length = 1950
Score = 27.5 bits (58), Expect = 9.4
Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
Query: 28 YRHSPLQLCTDPELFSYTNRHRSDLHLAMGPISHYYRPSPLRLCTD 73
YRH L LC+D L + + RS L MGP+ P+ +C+D
Sbjct: 506 YRHRLLSLCSDVGLAAESKSGRSGADL-MGPL----LPAVAEICSD 546
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.323 0.140 0.455
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,977,017
Number of Sequences: 37544
Number of extensions: 399049
Number of successful extensions: 592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 585
Number of HSP's gapped (non-prelim): 11
length of query: 226
length of database: 14,793,348
effective HSP length: 80
effective length of query: 146
effective length of database: 11,789,828
effective search space: 1721314888
effective search space used: 1721314888
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)
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