GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001606-TA|BGIBMGA001606-PA|undefined
         (226 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical pr...    31   0.89 
AL132864-4|CAH60767.1|  272|Caenorhabditis elegans Hypothetical ...    29   2.7  
AL110478-12|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical...    28   4.8  
Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical pr...    28   6.3  
U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical pr...    28   6.3  
AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquino...    28   6.3  

>Z77664-1|CAB01216.2|  900|Caenorhabditis elegans Hypothetical
           protein F53H10.2 protein.
          Length = 900

 Score = 30.7 bits (66), Expect = 0.89
 Identities = 24/82 (29%), Positives = 38/82 (46%), Gaps = 10/82 (12%)

Query: 113 SYTNRHRSDLHLAEDPIPHYYRYSPLRLCTDPELFSY-TNRHRSDLHLAEGPIPNYYRPS 171
           S+ N H    + + +P+    R+SP  +   P  FS  T+ +R +  +    +PNY  P+
Sbjct: 67  SHQNNHLPTKNYSYEPL----RFSPPNVTPPPLQFSTNTDGNRKNQRVRFNELPNYSTPN 122

Query: 172 ----PLRLCT-DPELFSCTNRH 188
               P R C+  P  FS  N H
Sbjct: 123 HYSVPPRKCSLAPNFFSSQNSH 144


>AL132864-4|CAH60767.1|  272|Caenorhabditis elegans Hypothetical
           protein Y53H1A.5 protein.
          Length = 272

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 16/72 (22%), Positives = 29/72 (40%)

Query: 33  LQLCTDPELFSYTNRHRSDLHLAMGPISHYYRPSPLRLCTDPELFSYTNRHRSDLHLAEG 92
           +QL  D +L  YT +   +    + P+S+      +R      +    N+H++ L     
Sbjct: 62  VQLPPDCKLVEYTWQENGESRTVLIPMSNDSTEDDVRSALPQSVLESINQHQNQLRQGNA 121

Query: 93  PIPHYYRHSPLP 104
              HYY+    P
Sbjct: 122 QAVHYYQKHQNP 133


>AL110478-12|CAB54347.2| 1435|Caenorhabditis elegans Hypothetical
            protein Y26D4A.9 protein.
          Length = 1435

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 14/40 (35%), Positives = 21/40 (52%)

Query: 93   PIPHYYRHSPLPFYTDPELFSYTNRHRSDLHLAEDPIPHY 132
            P+  + RH+ LPF  + +L   TN+  SDL      + HY
Sbjct: 1077 PVELHDRHNDLPFCPENKLVGTTNKLISDLSNKTKYVIHY 1116


>Z49910-1|CAA90118.1|  160|Caenorhabditis elegans Hypothetical
           protein F44G4.2 protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 73  DPELFSYTNRHRSDLHLAEGPIPHYYRHSP 102
           +PEL +Y   +R  +   + PIP Y+  +P
Sbjct: 56  NPELHTYDGDYRGTISKGDKPIPDYFYRTP 85



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 143 DPELFSYTNRHRSDLHLAEGPIPNYYRPSP 172
           +PEL +Y   +R  +   + PIP+Y+  +P
Sbjct: 56  NPELHTYDGDYRGTISKGDKPIPDYFYRTP 85



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 108 DPELFSYTNRHRSDLHLAEDPIPHYYRYSP 137
           +PEL +Y   +R  +   + PIP Y+  +P
Sbjct: 56  NPELHTYDGDYRGTISKGDKPIPDYFYRTP 85


>U97550-1|AAK18983.2| 1065|Caenorhabditis elegans Hypothetical
           protein T20F7.5 protein.
          Length = 1065

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/48 (29%), Positives = 22/48 (45%)

Query: 163 PIPNYYRPSPLRLCTDPELFSCTNRHRSDLHLAEGPIPHYYRHSPLQF 210
           P+ ++Y P P R+   P  F+  + +      A  P P YY   P Q+
Sbjct: 84  PVASFYPPPPPRVYGVPNGFNFAHHNNYIPMNAHRPGPPYYTSPPAQY 131



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/48 (27%), Positives = 22/48 (45%)

Query: 58  PISHYYRPSPLRLCTDPELFSYTNRHRSDLHLAEGPIPHYYRHSPLPF 105
           P++ +Y P P R+   P  F++ + +      A  P P YY   P  +
Sbjct: 84  PVASFYPPPPPRVYGVPNGFNFAHHNNYIPMNAHRPGPPYYTSPPAQY 131


>AF304128-1|AAG50241.1|  160|Caenorhabditis elegans NADH ubiquinone
           oxidoreductaseAGGG subunit protein.
          Length = 160

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 73  DPELFSYTNRHRSDLHLAEGPIPHYYRHSP 102
           +PEL +Y   +R  +   + PIP Y+  +P
Sbjct: 56  NPELHTYDGDYRGTISKGDKPIPDYFYRTP 85



 Score = 27.9 bits (59), Expect = 6.3
 Identities = 10/30 (33%), Positives = 18/30 (60%)

Query: 143 DPELFSYTNRHRSDLHLAEGPIPNYYRPSP 172
           +PEL +Y   +R  +   + PIP+Y+  +P
Sbjct: 56  NPELHTYDGDYRGTISKGDKPIPDYFYRTP 85



 Score = 27.5 bits (58), Expect = 8.3
 Identities = 10/30 (33%), Positives = 17/30 (56%)

Query: 108 DPELFSYTNRHRSDLHLAEDPIPHYYRYSP 137
           +PEL +Y   +R  +   + PIP Y+  +P
Sbjct: 56  NPELHTYDGDYRGTISKGDKPIPDYFYRTP 85


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.323    0.140    0.455 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,789,557
Number of Sequences: 27539
Number of extensions: 340615
Number of successful extensions: 689
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 672
Number of HSP's gapped (non-prelim): 18
length of query: 226
length of database: 12,573,161
effective HSP length: 79
effective length of query: 147
effective length of database: 10,397,580
effective search space: 1528444260
effective search space used: 1528444260
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)