Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001605-TA|BGIBMGA001605-PA|undefined
         (49 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo...    26   0.70 
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    23   3.7  
SPCC550.03c |||RNA helicase involved in mRNA catabolism|Schizosa...    22   8.6  

>SPCC18.03 |||shuttle craft like transcriptional
            regulator|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1077

 Score = 25.8 bits (54), Expect = 0.70
 Identities = 12/30 (40%), Positives = 17/30 (56%)

Query: 16   IEDKGSQIVLHMQEIYSQARADVHLVPDNS 45
            I DK   +    Q I+S+ +A + LVPD S
Sbjct: 1034 INDKNEIVKTRSQRIHSKKKAFLSLVPDKS 1063


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 23.4 bits (48), Expect = 3.7
 Identities = 9/27 (33%), Positives = 14/27 (51%)

Query: 14  PVIEDKGSQIVLHMQEIYSQARADVHL 40
           PVI   G+ I  H +E++ +   D  L
Sbjct: 487 PVIASSGAGIPQHFEEVFKETDCDAAL 513


>SPCC550.03c |||RNA helicase involved in mRNA
            catabolism|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1213

 Score = 22.2 bits (45), Expect = 8.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)

Query: 15   VIEDKGSQIVLHMQEIYSQARADVHLVPDNSQITK 49
            V+E    + ++ + E+  + R    +V D+S  TK
Sbjct: 1159 VLEGSIVRTIIRLDEVLRECRGAARVVGDSSMYTK 1193


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.312    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 201,182
Number of Sequences: 5004
Number of extensions: 4900
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 49
length of database: 2,362,478
effective HSP length: 30
effective length of query: 19
effective length of database: 2,212,358
effective search space: 42034802
effective search space used: 42034802
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 45 (22.2 bits)