GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001605-TA|BGIBMGA001605-PA|undefined
         (49 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0318 - 17457182-17462232,17462745-17462955,17463356-174634...    27   1.4  

>12_02_0318 -
          17457182-17462232,17462745-17462955,17463356-17463403,
          17466161-17466346
          Length = 1831

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 3/45 (6%)

Query: 3  ETSFIGQVQSNPVIEDKGSQIVLHMQEIYSQARADVHLVPDNSQI 47
          E  +IG+ + NP+ ED    +    QE+YS+   D+H + +  Q+
Sbjct: 22 ERFYIGREERNPLAEDIHQAVTYLSQELYSK---DLHFLMELIQL 63


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.312    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,171,956
Number of Sequences: 37544
Number of extensions: 27549
Number of successful extensions: 36
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 35
Number of HSP's gapped (non-prelim): 1
length of query: 49
length of database: 14,793,348
effective HSP length: 30
effective length of query: 19
effective length of database: 13,667,028
effective search space: 259673532
effective search space used: 259673532
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)