GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001605-TA|BGIBMGA001605-PA|undefined
         (49 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50858-6|CAD44135.1|  949|Caenorhabditis elegans Hypothetical pr...    25   4.9  
AL021567-5|CAD44122.1|  949|Caenorhabditis elegans Hypothetical ...    25   4.9  
AL021567-3|CAD44121.1|  947|Caenorhabditis elegans Hypothetical ...    25   4.9  
AL021567-2|CAA16508.2|  898|Caenorhabditis elegans Hypothetical ...    25   4.9  

>Z50858-6|CAD44135.1|  949|Caenorhabditis elegans Hypothetical
           protein F21A10.2c protein.
          Length = 949

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   QVQSNPVIEDKGSQIVLHMQEIYSQARADVHLVPDNSQITK 49
           Q+ + P++  +     LH Q+IY Q  A + + P  + +T+
Sbjct: 66  QMANQPMLMPQHMLQQLHQQQIYEQQLASMPMTPAITDLTR 106


>AL021567-5|CAD44122.1|  949|Caenorhabditis elegans Hypothetical
           protein F21A10.2c protein.
          Length = 949

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   QVQSNPVIEDKGSQIVLHMQEIYSQARADVHLVPDNSQITK 49
           Q+ + P++  +     LH Q+IY Q  A + + P  + +T+
Sbjct: 66  QMANQPMLMPQHMLQQLHQQQIYEQQLASMPMTPAITDLTR 106


>AL021567-3|CAD44121.1|  947|Caenorhabditis elegans Hypothetical
           protein F21A10.2b protein.
          Length = 947

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9   QVQSNPVIEDKGSQIVLHMQEIYSQARADVHLVPDNSQITK 49
           Q+ + P++  +     LH Q+IY Q  A + + P  + +T+
Sbjct: 64  QMANQPMLMPQHMLQQLHQQQIYEQQLASMPMTPAITDLTR 104


>AL021567-2|CAA16508.2|  898|Caenorhabditis elegans Hypothetical
          protein F21A10.2a protein.
          Length = 898

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 11/41 (26%), Positives = 22/41 (53%)

Query: 9  QVQSNPVIEDKGSQIVLHMQEIYSQARADVHLVPDNSQITK 49
          Q+ + P++  +     LH Q+IY Q  A + + P  + +T+
Sbjct: 15 QMANQPMLMPQHMLQQLHQQQIYEQQLASMPMTPAITDLTR 55


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.312    0.127    0.340 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,049,434
Number of Sequences: 27539
Number of extensions: 25607
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 28
Number of HSP's gapped (non-prelim): 4
length of query: 49
length of database: 12,573,161
effective HSP length: 30
effective length of query: 19
effective length of database: 11,746,991
effective search space: 223192829
effective search space used: 223192829
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.9 bits)
S2: 51 (24.6 bits)