Silkworm BLAST Result against human

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001604-TA|BGIBMGA001604-PA|undefined
         (105 letters)

Database: human 
           224,733 sequences; 73,234,838 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein...    30   1.5  
U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subuni...    27   7.8  
AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta subu...    27   7.8  

>AB208804-1|BAD92041.1| 1284|Homo sapiens Adapter-related protein
            complex 3 delta 1 subunit variant protein.
          Length = 1284

 Score = 29.9 bits (64), Expect = 1.5
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 7/51 (13%)

Query: 8    GEFNIAFYQPKKDQCEDCVAY-----NNATGEDKNRL--RPKYENHLKEKE 51
            GE ++      KD+CED         ++A G+D+++   +PK + H KEKE
Sbjct: 963  GELSVNTVTTPKDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKE 1013


>U91930-1|AAD03777.1| 1112|Homo sapiens AP-3 complex delta subunit
           protein.
          Length = 1112

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 17  PKKDQCEDCVAY-----NNATGEDKNRL--RPKYENHLKEKE 51
           P  D+CED         ++A G+D+++   +PK + H KEKE
Sbjct: 800 PSTDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKE 841


>AC005545-2|AAC34214.1| 1079|Homo sapiens AP-3 complex delta
           subunit, partial CDS protein.
          Length = 1079

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 7/42 (16%)

Query: 17  PKKDQCEDCVAY-----NNATGEDKNRL--RPKYENHLKEKE 51
           P  D+CED         ++A G+D+++   +PK + H KEKE
Sbjct: 767 PSTDECEDAKTEAQGEEDDAEGQDQDKKSPKPKKKKHRKEKE 808


  Database: human
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 73,234,838
  Number of sequences in database:  224,733
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,674,137
Number of Sequences: 224733
Number of extensions: 400129
Number of successful extensions: 696
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 696
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 73,234,838
effective HSP length: 79
effective length of query: 26
effective length of database: 55,480,931
effective search space: 1442504206
effective search space used: 1442504206
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 58 (27.5 bits)