GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001604-TA|BGIBMGA001604-PA|undefined
         (105 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0950 - 29090734-29091747                                         28   1.6  
07_03_1692 - 28733184-28733980,28734306-28734373,28734481-287345...    27   2.2  
06_01_0616 + 4467439-4467733,4469232-4469294,4469840-4471176,447...    26   5.0  

>03_05_0950 - 29090734-29091747
          Length = 337

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 16/53 (30%), Positives = 28/53 (52%), Gaps = 2/53 (3%)

Query: 5   IFNGEFNIAFYQPKKDQCEDCVAY--NNATGEDKNRLRPKYENHLKEKELSRI 55
           +++G+  I     K + CE CVA+  N +  +DK R+    E    E++L R+
Sbjct: 189 LYHGKLAIMPLSSKMEFCEFCVAWTGNRSKLDDKPRVAAASEPAAAEEKLRRV 241


>07_03_1692 -
           28733184-28733980,28734306-28734373,28734481-28734594,
           28734835-28734884,28735012-28735422,28735534-28735610,
           28736083-28736257,28736843-28736939,28737070-28737833,
           28737900-28738001,28738093-28738174,28739004-28739161
          Length = 964

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)

Query: 13  AFYQPKKDQCEDC-VAYNNATGEDKNRLRPKYENHLKEKELSRI 55
           A + P KD      VA   A G  +N+L P+Y   + ++EL +I
Sbjct: 308 AVFDPTKDMLPHLRVARPPAEGRGRNQLLPRYWPRITDQELQQI 351


>06_01_0616 +
           4467439-4467733,4469232-4469294,4469840-4471176,
           4472719-4473086,4473526-4473559,4473978-4474421
          Length = 846

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)

Query: 25  CVAYNNATGEDKNRLRPK 42
           C   +N+TG+DK RL+P+
Sbjct: 738 CARKSNSTGDDKLRLKPR 755


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,646,464
Number of Sequences: 37544
Number of extensions: 74362
Number of successful extensions: 117
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 116
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 14,793,348
effective HSP length: 72
effective length of query: 33
effective length of database: 12,090,180
effective search space: 398975940
effective search space used: 398975940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)