GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001604-TA|BGIBMGA001604-PA|undefined
         (105 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF482952-1|AAL89754.1|  668|Caenorhabditis elegans CUP-5L protein.     27   2.6  
AC006679-11|AAP82643.1|  668|Caenorhabditis elegans Coelomocyte ...    27   2.6  
Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical pr...    27   3.4  
Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical pr...    25   7.9  

>AF482952-1|AAL89754.1|  668|Caenorhabditis elegans CUP-5L protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 13  AFYQPKKDQCEDCVAYNNATGEDKNRLRP 41
           +F  P  D  ED +A  NA G D +  RP
Sbjct: 637 SFSNPLNDSNEDVLADQNANGNDPHNSRP 665


>AC006679-11|AAP82643.1|  668|Caenorhabditis elegans Coelomocyte
           uptake defective protein5, isoform d protein.
          Length = 668

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/29 (41%), Positives = 15/29 (51%)

Query: 13  AFYQPKKDQCEDCVAYNNATGEDKNRLRP 41
           +F  P  D  ED +A  NA G D +  RP
Sbjct: 637 SFSNPLNDSNEDVLADQNANGNDPHNSRP 665


>Z69661-2|CAA93494.1|  925|Caenorhabditis elegans Hypothetical
           protein F48F7.4 protein.
          Length = 925

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 16/41 (39%), Positives = 22/41 (53%), Gaps = 7/41 (17%)

Query: 13  AFYQPKKDQCEDCVAYNNATGE-------DKNRLRPKYENH 46
           A  QP++ Q +  V Y NATGE       D N  + +YEN+
Sbjct: 592 AHEQPQQQQQQRYVNYGNATGERERQPRRDNNYSKNRYENN 632


>Z93378-1|CAB07582.1|  303|Caenorhabditis elegans Hypothetical
          protein F19H8.2 protein.
          Length = 303

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 16 QPKKDQCEDCVAYNNATGEDKNRLRPKYENHLKEKE 51
          QP K Q       +N+T E + RL P +  HLK  E
Sbjct: 52 QPDKVQALLLDDSSNSTHESQGRLCPSWCGHLKSNE 87


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,536,782
Number of Sequences: 27539
Number of extensions: 78781
Number of successful extensions: 172
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 169
Number of HSP's gapped (non-prelim): 4
length of query: 105
length of database: 12,573,161
effective HSP length: 71
effective length of query: 34
effective length of database: 10,617,892
effective search space: 361008328
effective search space used: 361008328
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 53 (25.4 bits)