GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001604-TA|BGIBMGA001604-PA|undefined
         (105 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   1.3  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   1.3  
DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.              21   4.1  

>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 40  RPKYENHLKEKELSR 54
           RPK EN+   +ELSR
Sbjct: 632 RPKSENNFASQELSR 646


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 1.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)

Query: 40  RPKYENHLKEKELSR 54
           RPK EN+   +ELSR
Sbjct: 600 RPKSENNFASQELSR 614


>DQ435329-1|ABD92644.1|  150|Apis mellifera OBP12 protein.
          Length = 150

 Score = 20.6 bits (41), Expect = 4.1
 Identities = 9/25 (36%), Positives = 13/25 (52%)

Query: 24 DCVAYNNATGEDKNRLRPKYENHLK 48
          DCV  +N T  +  +LR   E  +K
Sbjct: 33 DCVDRSNMTFHELKKLRDSSEARIK 57


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,747
Number of Sequences: 429
Number of extensions: 1210
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of query: 105
length of database: 140,377
effective HSP length: 50
effective length of query: 55
effective length of database: 118,927
effective search space:  6540985
effective search space used:  6540985
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 38 (20.5 bits)
S2: 38 (19.4 bits)