GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001604-TA|BGIBMGA001604-PA|undefined
         (105 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity ...    25   9.9  

>At1g14430.1 68414.m01711 glyoxal oxidase-related low similarity to
           glyoxal oxidase precursor (glx1) [Phanerochaete
           chrysosporium] GI:1050302
          Length = 849

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 10/25 (40%), Positives = 15/25 (60%)

Query: 72  VAVYDLQAVMPCPRGDVSNFYCVSS 96
           VAV+++    P PR  + +F C SS
Sbjct: 558 VAVWEISVKTPTPREKIFDFVCPSS 582


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.322    0.138    0.424 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,299,332
Number of Sequences: 28952
Number of extensions: 69168
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 107
Number of HSP's gapped (non-prelim): 1
length of query: 105
length of database: 12,070,560
effective HSP length: 71
effective length of query: 34
effective length of database: 10,014,968
effective search space: 340508912
effective search space used: 340508912
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.9 bits)
S2: 52 (25.0 bits)