Silkworm BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|ch...    33   0.060
SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyce...    31   0.18 
SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces po...    29   0.74 
SPBC19C2.07 |fba1||fructose-bisphosphate aldolase Fba1|Schizosac...    28   1.7  
SPAC607.03c |snu13||U3 snoRNP-associated protein Snu13|Schizosac...    27   3.9  
SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces ...    27   5.2  

>SPAC17H9.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 604

 Score = 33.1 bits (72), Expect = 0.060
 Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 2/87 (2%)

Query: 97  LHCLITPLQFIAAHDRIINAWGHTSPAWQLCI-TW-TTHDTHATFKLSLDSPQTSSSTGD 154
           ++C      F A   +I++  G T+   QL + +W T H  H     +L +P+   STG 
Sbjct: 229 INCQADARSFYAERSKIVHVAGLTNDVTQLELESWFTNHGVHPVALWTLKTPEPYKSTGT 288

Query: 155 NHAAFSSINNNCSIFTAEWYAIYQALL 181
               F+S  +         Y +   +L
Sbjct: 289 GFVLFASHEDAADALAFNGYCLGDRML 315


>SPBC25D12.03c |mcm7||MCM complex subunit Mcm7|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 760

 Score = 31.5 bits (68), Expect = 0.18
 Identities = 19/52 (36%), Positives = 29/52 (55%), Gaps = 3/52 (5%)

Query: 261 IDHSAL-LKVPYTDFQAEFSIILKQLWLECWKKATEFKGKWYTGIQKTPPTK 311
           +D S + L  PYT F+A  + +L   +LEC   +   K   YT I+KTP ++
Sbjct: 292 VDISGIFLPTPYTGFRAMRAGLLTDTYLECHYVSQIIKN--YTNIEKTPQSE 341


>SPBC17A3.06 |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 330

 Score = 29.5 bits (63), Expect = 0.74
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 2/71 (2%)

Query: 238 WVPLHSGITGN-EEADRAATGNPDIDHSALLKVPYTDFQAEFSIILKQLWLECWKKATEF 296
           W P    I  + +EA+     + D+   A+ +V Y D   + S I K L++  WK A+E 
Sbjct: 7   WQPQFDEIHSSVQEAEGFLQSSNDVQ-KAIDEVHYPDSLNDLSEISKNLYISSWKTASEL 65

Query: 297 KGKWYTGIQKT 307
                 GI  T
Sbjct: 66  VSTSDKGIDYT 76


>SPBC19C2.07 |fba1||fructose-bisphosphate aldolase
           Fba1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 358

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 228 YCKERLVTFKWVPLHSGITGNEEADRAATGNPDIDHSALLKVP 270
           YCK  +    W+ +  GITG EE       N  + H+ L   P
Sbjct: 159 YCKRAVPMKIWIEMEIGITGGEE---DGVDNSHVSHTELYTQP 198


>SPAC607.03c |snu13||U3 snoRNP-associated protein
           Snu13|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 125

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 55  HNPRILADKSTSLTVVPQQASIAASTGPSQPTHRAS 90
           H P +  DK+     VP +A++  + G S+P   AS
Sbjct: 65  HLPLLCEDKNVPYVFVPSKAALGRACGVSRPVISAS 100


>SPAC694.04c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 324

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 284 QLWLECWKKATEFKGKWY 301
           Q +LEC++KA++  G W+
Sbjct: 170 QTYLECFQKASDLMGTWF 187


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,664,463
Number of Sequences: 5004
Number of extensions: 67773
Number of successful extensions: 169
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 165
Number of HSP's gapped (non-prelim): 6
length of query: 348
length of database: 2,362,478
effective HSP length: 73
effective length of query: 275
effective length of database: 1,997,186
effective search space: 549226150
effective search space used: 549226150
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 54 (25.8 bits)