GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired pr...    22   5.7  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   7.6  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   7.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   7.6  
AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain tran...    22   7.6  
AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia or...    22   7.6  
AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia or...    22   7.6  

>DQ414248-1|ABD63010.2|  311|Tribolium castaneum sloppy-paired
           protein.
          Length = 311

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 10/27 (37%), Positives = 14/27 (51%)

Query: 292 KATEFKGKWYTGIQKTPPTKPWYAKTT 318
           K T   G +Y  +Q  PP  P+Y  T+
Sbjct: 191 KRTIALGAFYQPLQPFPPPYPFYPGTS 217


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 23/118 (19%), Positives = 52/118 (44%), Gaps = 10/118 (8%)

Query: 15  YIQVPNNNIWT----VGLPSNITRSVEDLPFVVNLQLRIKNFGYHNPRILADKSTS---L 67
           Y+ +  N ++T      +P N+T S+++  +++   +R+K   Y    +      +   L
Sbjct: 310 YLAIVFNGLFTEEDVADVPINVTLSLDEKKYILQEVVRVKKPHYELNMVEVRSPVTPADL 369

Query: 68  TVVPQQASIAASTGPSQP-THRASCSYGTQLHCLITPLQFIAAHDRIINAWGHTSPAW 124
            ++ +   +   +  S+P   R S S  T++ C +      ++ D   N +G +  AW
Sbjct: 370 RLLTRGRLVLTVSSVSKPEALRLSGSVVTKVTCELFQATLSSSSD--TNRFGTSGLAW 425


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 55   HNPRILADKSTSLTVVPQQASIA 77
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase CHS2
            protein.
          Length = 1464

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 55   HNPRILADKSTSLTVVPQQASIA 77
            +NP I A +  SL  V Q+ SIA
Sbjct: 1407 NNPSISAFRKKSLAYVQQRMSIA 1429


>AY043293-1|AAK96033.1|  523|Tribolium castaneum homeodomain
           transcription factor Maxillopediaprotein.
          Length = 523

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 146 PQTSSSTGDNHAAFSSINNN 165
           P  SS+ G+N+   S+ NNN
Sbjct: 119 PDISSTRGNNNNTPSATNNN 138


>AF187069-1|AAF03889.1|  471|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 471

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 146 PQTSSSTGDNHAAFSSINNN 165
           P  SS+ G+N+   S+ NNN
Sbjct: 67  PDISSTRGNNNNTPSATNNN 86


>AF187068-1|AAF03888.1|  477|Tribolium castaneum proboscipedia
           ortholog protein.
          Length = 477

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 9/20 (45%), Positives = 13/20 (65%)

Query: 146 PQTSSSTGDNHAAFSSINNN 165
           P  SS+ G+N+   S+ NNN
Sbjct: 250 PDISSTRGNNNNTPSATNNN 269


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 86,122
Number of Sequences: 317
Number of extensions: 3640
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3
Number of HSP's gapped (non-prelim): 7
length of query: 348
length of database: 114,650
effective HSP length: 57
effective length of query: 291
effective length of database: 96,581
effective search space: 28105071
effective search space used: 28105071
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)