GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1080 - 24197514-24199415                                         31   1.8  
01_05_0080 - 17957276-17957676,17957810-17957921,17958001-179581...    30   2.4  
07_01_1146 + 10756897-10757065,10763869-10765521,10765638-107659...    28   9.6  

>08_02_1080 - 24197514-24199415
          Length = 633

 Score = 30.7 bits (66), Expect = 1.8
 Identities = 16/72 (22%), Positives = 31/72 (43%)

Query: 242 HSGITGNEEADRAATGNPDIDHSALLKVPYTDFQAEFSIILKQLWLECWKKATEFKGKWY 301
           HSG+  N+   +  + +   +HSA  K+P+    A+ S +    W    +K  +     +
Sbjct: 551 HSGVAKNKVTSKINSNSYSGNHSAKEKLPHNSSFAKLSDLSANKWSPFLEKFQDLLQSMF 610

Query: 302 TGIQKTPPTKPW 313
              ++T    PW
Sbjct: 611 QDRKQTAGRNPW 622


>01_05_0080 -
           17957276-17957676,17957810-17957921,17958001-17958126,
           17958199-17958331,17960069-17960193,17960314-17960409,
           17960430-17960621,17960694-17960800,17961318-17961426,
           17961538-17961624,17963017-17963103,17964254-17964379
          Length = 566

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 1/34 (2%)

Query: 26  VGLPSNITRSVEDLPFVVNLQLRIKNFGYHNPRI 59
           + LP N+TRS+ DLP +  L +R+     HNP I
Sbjct: 231 LALPYNVTRSLGDLPVLFAL-MRVVQSLLHNPHI 263


>07_01_1146 + 10756897-10757065,10763869-10765521,10765638-10765900,
            10766057-10766266,10766818-10767036,10767379-10768344,
            10768575-10768670,10768772-10768870,10769349-10769538,
            10769623-10769855
          Length = 1365

 Score = 28.3 bits (60), Expect = 9.6
 Identities = 18/59 (30%), Positives = 30/59 (50%), Gaps = 7/59 (11%)

Query: 18   VPNNNIWTVGLPSNITRSVEDLPFVVNLQLRIKNFGYHNPRILADKSTSLTVVPQQASI 76
            V +N+ W   +PS     V+ +P   N +  + N GYH  R+L+ K++    V   AS+
Sbjct: 1250 VISNSTWDYKIPS-----VDTIPKQFNAE--VLNTGYHKHRVLSSKASGEPAVVLGASV 1301


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,155,695
Number of Sequences: 37544
Number of extensions: 397185
Number of successful extensions: 893
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 892
Number of HSP's gapped (non-prelim): 3
length of query: 348
length of database: 14,793,348
effective HSP length: 83
effective length of query: 265
effective length of database: 11,677,196
effective search space: 3094456940
effective search space used: 3094456940
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)