GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.4  
SB_59610| Best HMM Match : RnaseH (HMM E-Value=4.4e-19)                29   5.6  
SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   7.4  
SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)                28   9.8  
SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)                   28   9.8  
SB_12147| Best HMM Match : QRPTase_C (HMM E-Value=0)                   28   9.8  

>SB_21884| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 30.3 bits (65), Expect = 2.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)

Query: 80  TGPSQPTHRASCSYGTQLHCLITPLQFIAAHDRIINA 116
           TG S P+   +  Y TQ+  L T LQ + AH    NA
Sbjct: 62  TGSSTPSVSGNTDYSTQIKNLTTELQHLGAHMNFHNA 98


>SB_59610| Best HMM Match : RnaseH (HMM E-Value=4.4e-19)
          Length = 191

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 15/32 (46%), Positives = 18/32 (56%)

Query: 229 CKERLVTFKWVPLHSGITGNEEADRAATGNPD 260
           C E  V +  V  H+GI GNE AD+ A G  D
Sbjct: 156 CSEIDVHWTHVAGHAGIEGNEIADQLAKGGAD 187


>SB_37783| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 277

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 21/56 (37%), Positives = 30/56 (53%), Gaps = 2/56 (3%)

Query: 242 HSGITGNEEADRAATGNPDIDHSALLKVPYTDFQAEFSIILKQLWLECWKKATEFK 297
           H  +  N E  RA + + DI  +++L+    D QAE   ILKQ   EC KK+  F+
Sbjct: 30  HDEMKNNLEKLRALSKD-DISENSMLR-SRIDQQAELICILKQRADECTKKSIGFE 83


>SB_20355| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 17/49 (34%), Positives = 22/49 (44%), Gaps = 2/49 (4%)

Query: 109 AHDRIINAWGHTSPAWQLCI-TWTT-HDTHATFKLSLDSPQTSSSTGDN 155
           A D +IN W   + AW   I TW T  +T  T   + D+      TG N
Sbjct: 70  AWDTVINTWDTVTNAWDTVINTWDTGTNTRDTVTNARDAVTNMRDTGTN 118


>SB_36084| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 751

 Score = 28.7 bits (61), Expect = 7.4
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 49  IKNFGYHNPRILA-DKSTSLTVVPQQASIAASTGPSQPTHR 88
           + NF   +PR +A D S+++ V P   S +     S P HR
Sbjct: 467 VSNFSISSPRTVALDSSSTMNVSPNSDSSSRQPVASDPNHR 507


>SB_23419| Best HMM Match : zf-A20 (HMM E-Value=1.8e-37)
          Length = 1188

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 11/17 (64%), Positives = 12/17 (70%)

Query: 71  PQQASIAASTGPSQPTH 87
           PQ AS+  S G SQPTH
Sbjct: 548 PQHASVGTSMGQSQPTH 564



 Score = 28.3 bits (60), Expect = 9.8
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 2/28 (7%)

Query: 71  PQQASIAASTGPSQPTHRAS--CSYGTQ 96
           PQQAS+  S G SQP   A+  C Y  Q
Sbjct: 569 PQQASVGTSMGQSQPAQCATVGCKYQAQ 596


>SB_4910| Best HMM Match : HECT (HMM E-Value=5.8e-33)
          Length = 958

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 245 ITGNEEADRAATGNPDIDHSALLKV-PYTDFQAEFSIILKQLW 286
           IT NE  +R   GNPD+  S L     Y D  +E S  +K LW
Sbjct: 425 ITWNE-LERGICGNPDVSPSVLKSACKYGDDLSESSECIKFLW 466


>SB_12147| Best HMM Match : QRPTase_C (HMM E-Value=0)
          Length = 306

 Score = 28.3 bits (60), Expect = 9.8
 Identities = 15/43 (34%), Positives = 25/43 (58%), Gaps = 3/43 (6%)

Query: 8   HFQDKLTYIQVPNNNIWTVGLPSNITRSVEDLPFVVNLQLRIK 50
           H  D  T I + +N+IW+ G   NITR+V++   V    ++I+
Sbjct: 164 HRYDLSTMIMLKDNHIWSTG---NITRAVKNARRVGGFSMKIE 203


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,047,448
Number of Sequences: 59808
Number of extensions: 479888
Number of successful extensions: 856
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 852
Number of HSP's gapped (non-prelim): 10
length of query: 348
length of database: 16,821,457
effective HSP length: 83
effective length of query: 265
effective length of database: 11,857,393
effective search space: 3142209145
effective search space used: 3142209145
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)