Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
(348 letters)
Database: human
224,733 sequences; 73,234,838 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AJ224117-1|CAA11835.1| 286|Homo sapiens RNase HII protein. 38 0.052
CR541820-1|CAG46619.1| 286|Homo sapiens RNASEH1 protein. 38 0.069
BT019670-1|AAV38476.1| 286|Homo sapiens ribonuclease H1 protein. 38 0.069
BC002973-1|AAH02973.1| 286|Homo sapiens ribonuclease H1 protein. 38 0.069
AF048995-1|AAC78564.1| 286|Homo sapiens ribonuclease H1 protein. 38 0.069
AF048994-1|AAC78563.1| 286|Homo sapiens ribonuclease H1 protein. 38 0.069
AF039652-1|AAC09261.1| 286|Homo sapiens ribonuclease H type II ... 38 0.069
AC108488-1|AAX82026.1| 286|Homo sapiens unknown protein. 38 0.069
>AJ224117-1|CAA11835.1| 286|Homo sapiens RNase HII protein.
Length = 286
Score = 37.9 bits (84), Expect = 0.052
Identities = 35/94 (37%), Positives = 46/94 (48%), Gaps = 10/94 (10%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALEN--KSSKFNLSYIVYDIKELIYR-- 226
AE +A +A+ + TDSM TIN + N + K N + KE+I +
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVRGWKKN-GWKTSAGKEVINKED 243
Query: 227 FYCKERL---VTFKW--VPLHSGITGNEEADRAA 255
F ERL + +W VP HSG GNEEADR A
Sbjct: 244 FVALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>CR541820-1|CAG46619.1| 286|Homo sapiens RNASEH1 protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>BT019670-1|AAV38476.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>BC002973-1|AAH02973.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>AF048995-1|AAC78564.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>AF048994-1|AAC78563.1| 286|Homo sapiens ribonuclease H1 protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>AF039652-1|AAC09261.1| 286|Homo sapiens ribonuclease H type II
protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
>AC108488-1|AAX82026.1| 286|Homo sapiens unknown protein.
Length = 286
Score = 37.5 bits (83), Expect = 0.069
Identities = 33/93 (35%), Positives = 45/93 (48%), Gaps = 8/93 (8%)
Query: 171 AEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLS-YIVYDIKELIYR--F 227
AE +A +A+ + TDSM TIN + N + + + KE+I + F
Sbjct: 185 AEIHAACKAIEQAKTQNINKLVLYTDSMFTINGITNWVQGWKKNGWKTSAGKEVINKEDF 244
Query: 228 YCKERL---VTFKW--VPLHSGITGNEEADRAA 255
ERL + +W VP HSG GNEEADR A
Sbjct: 245 VALERLTQGMDIQWMHVPGHSGFIGNEEADRLA 277
Database: human
Posted date: Oct 5, 2007 11:13 AM
Number of letters in database: 73,234,838
Number of sequences in database: 224,733
Lambda K H
0.320 0.132 0.419
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 53,279,249
Number of Sequences: 224733
Number of extensions: 2134999
Number of successful extensions: 3626
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 3618
Number of HSP's gapped (non-prelim): 8
length of query: 348
length of database: 73,234,838
effective HSP length: 91
effective length of query: 257
effective length of database: 52,784,135
effective search space: 13565522695
effective search space used: 13565522695
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 66 (30.7 bits)
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