GeneModel BLAST Result against fruitfly

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: fruitfly 
           52,641 sequences; 24,830,863 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.       50   4e-06
M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2 ...    44   4e-04
AY051903-1|AAK93327.1|  493|Drosophila melanogaster LD39232p pro...    32   1.3  
AE014134-3352|AAF53972.3|  493|Drosophila melanogaster CG9243-PA...    32   1.3  
AE014134-3351|ABI31326.1|  574|Drosophila melanogaster CG9243-PB...    32   1.3  
AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p pro...    30   4.1  
AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,...    30   4.1  
AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,...    30   4.1  
AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease...    29   7.2  
AY118485-1|AAM49854.1|  562|Drosophila melanogaster HL08030p pro...    29   9.5  
AE014135-198|AAN06581.2|  855|Drosophila melanogaster CG11155-PB...    29   9.5  

>AJ302712-2|CAC16871.1| 1227|Drosophila melanogaster pol protein.
          Length = 1227

 Score = 50.4 bits (115), Expect = 4e-06
 Identities = 52/171 (30%), Positives = 80/171 (46%), Gaps = 18/171 (10%)

Query: 167  SIFTAEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLSYIVYDIKELIYR 226
            SIFTAE +AI +A   F           TDS+S+++A+ N +     +      +E+ + 
Sbjct: 998  SIFTAEAFAILKAC-QFASKNAGKSVICTDSLSSLSAIRNWNHNDPTT------QEVRHI 1050

Query: 227  FYCKERLVTFKWVPLHSGITGNEEADRAATGNPDIDHSALLKVPYT--DFQAEFSIILKQ 284
                 + +T  WVP H GI GNE AD+AA     +  S +L  P+   D ++   + LK+
Sbjct: 1051 LSSHPKKITLLWVPSHQGIHGNELADKAAQ-EMRLTPS-ILFTPFNSKDLKSRIKLYLKE 1108

Query: 285  LWLECWKKATEFKGKWYTGIQKTPPTKPWYAKTTLNSRKQITVINRLRVGH 335
              L  W     F  + Y  I   P    +   T ++ R+  T I RLR+GH
Sbjct: 1109 KKLSEW---ALFMHR-YQSI--NPNCIMFKPPTNVHKRECATFI-RLRIGH 1152


>M14954-2|AAA70222.2| 1219|Drosophila melanogaster putative ORF2
            protein.
          Length = 1219

 Score = 43.6 bits (98), Expect = 4e-04
 Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 15/175 (8%)

Query: 167  SIFTAEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLSYIVYDIKELIYR 226
            S+ T+E  AI +A+              +DS+S +++++N +   N S+    I+ LI +
Sbjct: 983  SVLTSETIAILEAI-ELTKNRRGKFIICSDSLSAVDSIQNTN---NNSFYPSRIRSLITQ 1038

Query: 227  FYCKERLVTFKWVPLHSGITGNEEADRAATGNPDIDHSALLKVPYTDFQAEFSIILKQLW 286
               K +++   W+P HSGI GNE AD+AA     +       +  TD +      LK   
Sbjct: 1039 HAPKIKIM---WIPGHSGIKGNELADQAAKSASSMPLILTPNINTTDIKKH----LKADL 1091

Query: 287  LECWKKATEFKGKWYTGIQKTPPTKPWYAKTT---LNSRKQITVINRLRVGHCHV 338
                K+       WY  I         Y K +        QI +I RLR+GH ++
Sbjct: 1092 ATKQKEHIINCSPWYQSINTNTSHPCDYLKQSHPNWTRLDQIKII-RLRLGHTNI 1145


>AY051903-1|AAK93327.1|  493|Drosophila melanogaster LD39232p
           protein.
          Length = 493

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 296 FKGKWYTGIQKTPPTKPWYAKTTLNSRKQITV-INR 330
           FK  WY G  + P + PW   T +N R+ + + IN+
Sbjct: 258 FKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINK 293


>AE014134-3352|AAF53972.3|  493|Drosophila melanogaster CG9243-PA,
           isoform A protein.
          Length = 493

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 296 FKGKWYTGIQKTPPTKPWYAKTTLNSRKQITV-INR 330
           FK  WY G  + P + PW   T +N R+ + + IN+
Sbjct: 258 FKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINK 293


>AE014134-3351|ABI31326.1|  574|Drosophila melanogaster CG9243-PB,
           isoform B protein.
          Length = 574

 Score = 31.9 bits (69), Expect = 1.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)

Query: 296 FKGKWYTGIQKTPPTKPWYAKTTLNSRKQITV-INR 330
           FK  WY G  + P + PW   T +N R+ + + IN+
Sbjct: 258 FKAYWYLGSNEVPKSWPWIYHTHINQRRPLLLNINK 293


>AY089374-1|AAL90112.1|  333|Drosophila melanogaster AT19436p
           protein.
          Length = 333

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 217 VYDIKELIYRFYCKERLVTFKW--VPLHSGITGNEEADRAA 255
           V D KEL      +E  +T KW  V  H GI GNE AD+ A
Sbjct: 283 VVDFKELDKLL--QENNITVKWNYVEAHKGIEGNEMADKLA 321


>AE013599-539|AAF59170.1|  333|Drosophila melanogaster CG8729-PA,
           isoform A protein.
          Length = 333

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 217 VYDIKELIYRFYCKERLVTFKW--VPLHSGITGNEEADRAA 255
           V D KEL      +E  +T KW  V  H GI GNE AD+ A
Sbjct: 283 VVDFKELDKLL--QENNITVKWNYVEAHKGIEGNEMADKLA 321


>AE013599-538|AAS64899.1|  314|Drosophila melanogaster CG8729-PB,
           isoform B protein.
          Length = 314

 Score = 30.3 bits (65), Expect = 4.1
 Identities = 19/41 (46%), Positives = 22/41 (53%), Gaps = 4/41 (9%)

Query: 217 VYDIKELIYRFYCKERLVTFKW--VPLHSGITGNEEADRAA 255
           V D KEL      +E  +T KW  V  H GI GNE AD+ A
Sbjct: 264 VVDFKELDKLL--QENNITVKWNYVEAHKGIEGNEMADKLA 302


>AF032921-1|AAC47810.1|  333|Drosophila melanogaster ribonuclease H1
           protein.
          Length = 333

 Score = 29.5 bits (63), Expect = 7.2
 Identities = 16/39 (41%), Positives = 19/39 (48%)

Query: 217 VYDIKELIYRFYCKERLVTFKWVPLHSGITGNEEADRAA 255
           V D KEL          V + +V  H GI GNE AD+ A
Sbjct: 283 VVDFKELDKLLQDNNITVKWNYVEAHKGIEGNEMADKLA 321


>AY118485-1|AAM49854.1|  562|Drosophila melanogaster HL08030p
           protein.
          Length = 562

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 127 CITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSINNNCSIFTAEWYAI 176
           C+   T   H T  L L +     ++ DN      I NN ++  + W+AI
Sbjct: 430 CVEHDTTCGHGTLPLHLPNDVNDGASDDNTVDLVRIQNNFTLKNSFWFAI 479


>AE014135-198|AAN06581.2|  855|Drosophila melanogaster CG11155-PB,
           isoform B protein.
          Length = 855

 Score = 29.1 bits (62), Expect = 9.5
 Identities = 14/50 (28%), Positives = 22/50 (44%)

Query: 127 CITWTTHDTHATFKLSLDSPQTSSSTGDNHAAFSSINNNCSIFTAEWYAI 176
           C+   T   H T  L L +     ++ DN      I NN ++  + W+AI
Sbjct: 723 CVEHDTTCGHGTLPLHLPNDVNDGASDDNTVDLVRIQNNFTLKNSFWFAI 772


  Database: fruitfly
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 24,830,863
  Number of sequences in database:  52,641
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,406,996
Number of Sequences: 52641
Number of extensions: 708244
Number of successful extensions: 1936
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 1928
Number of HSP's gapped (non-prelim): 11
length of query: 348
length of database: 24,830,863
effective HSP length: 86
effective length of query: 262
effective length of database: 20,303,737
effective search space: 5319579094
effective search space used: 5319579094
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 62 (29.1 bits)