GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF025472-5|AAB71076.1|  423|Caenorhabditis elegans Hypothetical ...    32   0.52 
AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical...    31   1.2  
Z70781-7|CAJ55254.1|  380|Caenorhabditis elegans Hypothetical pr...    29   6.5  
AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical ...    29   6.5  
AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical ...    29   6.5  
AF025457-6|AAB70960.1|  333|Caenorhabditis elegans Hypothetical ...    28   8.5  

>AF025472-5|AAB71076.1|  423|Caenorhabditis elegans Hypothetical
           protein ZK250.7 protein.
          Length = 423

 Score = 32.3 bits (70), Expect = 0.52
 Identities = 14/59 (23%), Positives = 31/59 (52%), Gaps = 1/59 (1%)

Query: 38  DLPFVVNLQLRIKNFGYHNPRILADKSTSLTVVPQQASIAASTGPSQPTHRASCSYGTQ 96
           ++P+ + LQ    +FG+H   +  D+ T   VV ++  + A+ G      + +C++G +
Sbjct: 175 NIPWKIELQEENGSFGFHLHHVSEDR-TKTVVVEREIKLIAANGKFHSVPKRTCTFGAK 232


>AF016657-14|AAB93663.3|  495|Caenorhabditis elegans Hypothetical
           protein C16C4.13 protein.
          Length = 495

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 14/44 (31%), Positives = 26/44 (59%), Gaps = 1/44 (2%)

Query: 38  DLPFVVNLQLRIKNFGYHNPRILADKSTSLTVVPQQASIAASTG 81
           ++P+ + LQ    +FG+H P +  D+ T   VV ++A + A+ G
Sbjct: 175 NIPWKIELQKENGSFGFHLPHVSEDR-TKTGVVEREAKLIAANG 217


>Z70781-7|CAJ55254.1|  380|Caenorhabditis elegans Hypothetical
           protein F57A8.2b protein.
          Length = 380

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 15/35 (42%), Positives = 22/35 (62%), Gaps = 2/35 (5%)

Query: 243 SGITGNE--EADRAATGNPDIDHSALLKVPYTDFQ 275
           S +TG    +A +  T + DID+ ALLK+P  DF+
Sbjct: 344 SKMTGGSGSKAKQFMTNDGDIDYEALLKMPKDDFE 378


>AF003151-4|AAK18918.2|  142|Caenorhabditis elegans Hypothetical
           protein D1007.13a protein.
          Length = 142

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 71  PQQASIAASTGPSQPTHRASCSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 122
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P
Sbjct: 15  PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 66


>AF003151-3|ABJ99067.1|  247|Caenorhabditis elegans Hypothetical
           protein D1007.13b protein.
          Length = 247

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/52 (26%), Positives = 23/52 (44%)

Query: 71  PQQASIAASTGPSQPTHRASCSYGTQLHCLITPLQFIAAHDRIINAWGHTSP 122
           P   +  +ST  S P   +S +YG+ +     P  F  +     ++WG T P
Sbjct: 120 PSSPASTSSTAYSPPPATSSTTYGSSIPSTYPPSTFAPSAYPTSSSWGSTHP 171


>AF025457-6|AAB70960.1|  333|Caenorhabditis elegans Hypothetical
           protein C08E3.7 protein.
          Length = 333

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)

Query: 268 KVPYTDFQAEFSIILKQLW-LECWKKATEFKGKWYTGI 304
           K+   DF+ E S+  +QL   + WKKA +F G W   I
Sbjct: 200 KLEVIDFKGEGSVGFEQLINSDQWKKAKKFDGLWSLSI 237


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,846,141
Number of Sequences: 27539
Number of extensions: 357442
Number of successful extensions: 666
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 663
Number of HSP's gapped (non-prelim): 6
length of query: 348
length of database: 12,573,161
effective HSP length: 82
effective length of query: 266
effective length of database: 10,314,963
effective search space: 2743780158
effective search space used: 2743780158
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)