GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    24   1.7  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           23   3.9  
AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    22   6.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    22   9.1  
AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.      22   9.1  

>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 14/44 (31%), Positives = 24/44 (54%)

Query: 201 INALENKSSKFNLSYIVYDIKELIYRFYCKERLVTFKWVPLHSG 244
           I++L NK+   N +Y  Y+ K+L Y     E++     VP++ G
Sbjct: 304 ISSLSNKTIHNNNNYNNYNNKKLYYNINYIEQIPVPVPVPIYYG 347


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 23.0 bits (47), Expect = 3.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 1/34 (2%)

Query: 285 LWLECWK-KATEFKGKWYTGIQKTPPTKPWYAKT 317
           L LE W+ K      KW  GI  T  T P ++KT
Sbjct: 190 LGLEVWRDKVFITLPKWKDGIPVTLTTVPKHSKT 223


>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 22.2 bits (45), Expect = 6.9
 Identities = 10/46 (21%), Positives = 23/46 (50%)

Query: 6   LRHFQDKLTYIQVPNNNIWTVGLPSNITRSVEDLPFVVNLQLRIKN 51
           L+H +  +  +  P+N +  V L + +++  E  P   +L+  + N
Sbjct: 66  LKHLRAAVLVLTNPSNEVVAVALGALLSKGEESFPTARSLEKLLCN 111


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 56  NPRILADKSTSLTVVPQQASIAASTGPSQ 84
           NPRI +  S+S +  P     AA+  PS+
Sbjct: 514 NPRIASAPSSSTSSSPPAKGAAAAGQPSK 542


>AJ849455-1|CAH60991.1|  366|Apis mellifera twist protein protein.
          Length = 366

 Score = 21.8 bits (44), Expect = 9.1
 Identities = 10/28 (35%), Positives = 14/28 (50%)

Query: 232 RLVTFKWVPLHSGITGNEEADRAATGNP 259
           R + F +  LH  +   E AD A+  NP
Sbjct: 299 RYIDFLFQVLHCNMENTEGADDASERNP 326


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 103,357
Number of Sequences: 429
Number of extensions: 4248
Number of successful extensions: 14
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 10
Number of HSP's gapped (non-prelim): 5
length of query: 348
length of database: 140,377
effective HSP length: 58
effective length of query: 290
effective length of database: 115,495
effective search space: 33493550
effective search space used: 33493550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 44 (21.8 bits)