GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001603-TA|BGIBMGA001603-PA|IPR002156|Ribonuclease H,
IPR012337|Polynucleotidyl transferase, Ribonuclease H fold
         (348 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g10000.1 68414.m01128 expressed protein                             31   1.1  

>At1g10000.1 68414.m01128 expressed protein
          Length = 303

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 26/105 (24%), Positives = 49/105 (46%), Gaps = 6/105 (5%)

Query: 167 SIFTAEWYAIYQALLHFEXXXXXXXXXXTDSMSTINALENKSSKFNLSYIVYDIKELIYR 226
           S   AE +AI  A+LH            +DS S ++AL +  S   +  ++ +I+ +  R
Sbjct: 203 SPLAAEAWAIKSAMLHALQLERSDLLVLSDSKSIVDALNSNVSLNEIFGLLVEIRSIRNR 262

Query: 227 FYCKERLVTFKWVP--LHSGITGNEEADRAATGNPDIDHSALLKV 269
           F    R ++F+++P  ++S      +     +GN  +D   L+ V
Sbjct: 263 F----RSISFQFIPRLVNSIADAAAKLSLCISGNIGLDPGTLVFV 303


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.320    0.132    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,400,507
Number of Sequences: 28952
Number of extensions: 335383
Number of successful extensions: 756
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 756
Number of HSP's gapped (non-prelim): 1
length of query: 348
length of database: 12,070,560
effective HSP length: 82
effective length of query: 266
effective length of database: 9,696,496
effective search space: 2579267936
effective search space used: 2579267936
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 60 (28.3 bits)