GeneModel BLAST Result against mosquito

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001602-TA|BGIBMGA001602-PA|IPR007087|Zinc finger,
C2H2-type
         (400 letters)

Database: mosquito 
           2123 sequences; 516,269 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein ...    77   9e-16
M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.              27   0.91 
AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific tran...    25   3.7  

>AY939827-1|AAY18208.1|  680|Anopheles gambiae CTCF-like protein
           protein.
          Length = 680

 Score = 77.0 bits (181), Expect = 9e-16
 Identities = 60/193 (31%), Positives = 80/193 (41%), Gaps = 13/193 (6%)

Query: 28  ERCKKNST--KRNQLPNLPNEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGC 85
           E  KK  T  KR Q  +  + ++C +  CN   N + +L  H K H   SE        C
Sbjct: 107 EPAKKTQTRGKRTQ-QSTGSTYMCNY--CNYTSNKLFLLSRHLKTH---SEDRPHKCVVC 160

Query: 86  GAWFTTKALLGAHVRSHTGERLIACYHCGQHFANNRKLRDHLRRQNVDPESPFKCTMCGI 145
              F T A L  HV +HTG +   C HC   F  + +L  H+R ++   E P KCT C  
Sbjct: 161 ERGFKTLASLQNHVNTHTGTKPHRCKHCDNCFTTSGELIRHIRYRHTH-ERPHKCTECDY 219

Query: 146 PCATEYLLNEHARQHV--SAHVCALCDMTATSPAALAQHVRYRHLPRAPHHACTRCAYRA 203
                  L  H R H       C  C   +     L +H+R  H    P ++C  C  R 
Sbjct: 220 ASVELSKLKRHIRTHTGEKPFQCPHCTYASPDKFKLTRHMRI-HTGEKP-YSCDVCFARF 277

Query: 204 VTKNDLQKHLMIH 216
              N L+ H MIH
Sbjct: 278 TQSNSLKAHKMIH 290



 Score = 62.1 bits (144), Expect = 3e-11
 Identities = 43/173 (24%), Positives = 69/173 (39%), Gaps = 10/173 (5%)

Query: 47  HICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCGAWFTTKALLGAHVRSHTGER 106
           H C  T+C+     +  L  H + H    + F C    C      K  L  H+R HTGE+
Sbjct: 212 HKC--TECDYASVELSKLKRHIRTHTG-EKPFQCPH--CTYASPDKFKLTRHMRIHTGEK 266

Query: 107 LIACYHCGQHFANNRKLRDHLRRQNVDPESPFKCTMCGIPCATEYLLNEHARQHVSAH-- 164
             +C  C   F  +  L+ H     V  +  F+C +C   C  +  L  H +   +A   
Sbjct: 267 PYSCDVCFARFTQSNSLKAHKMIHQVGNKPVFQCKLCPTTCGRKTDLRIHVQNLHTADKP 326

Query: 165 -VCALCDMTATSPAALAQHVRYRHLPRAPHHACTRCAYRAVTKNDLQKHLMIH 216
             C  CD T     +   H +     +   + C  C Y +++   L+ HL++H
Sbjct: 327 IKCKRCDSTFPDRYSYKMHAKTHEGEKC--YRCEYCPYASISMRHLESHLLLH 377



 Score = 50.4 bits (115), Expect = 9e-08
 Identities = 42/174 (24%), Positives = 63/174 (36%), Gaps = 15/174 (8%)

Query: 54  CNRKFNSIQILFDHAKLH-VNYSEKFLCSWAGCGAWFTTKALLGAHVRS-HTGERLIACY 111
           C  +F     L  H  +H V     F C    C      K  L  HV++ HT ++ I C 
Sbjct: 273 CFARFTQSNSLKAHKMIHQVGNKPVFQCKL--CPTTCGRKTDLRIHVQNLHTADKPIKCK 330

Query: 112 HCGQHFANNRKLRDHLRRQNVDPESPFKCTMCGIPCATEYLLNEHARQHVSA--HVCALC 169
            C   F +    + H +    + E  ++C  C     +   L  H   H     + C  C
Sbjct: 331 RCDSTFPDRYSYKMHAKTH--EGEKCYRCEYCPYASISMRHLESHLLLHTDQKPYKCDQC 388

Query: 170 DMTATSPAALAQHVRYRH-------LPRAPHHACTRCAYRAVTKNDLQKHLMIH 216
             T      L +H+ Y H        P+A  H C  C      K +L +H+ +H
Sbjct: 389 AQTFRQKQLLKRHMNYYHNPDYVAPTPKAKTHICPTCKRPFRHKGNLIRHMAMH 442


>M93690-1|AAA29364.1|  613|Anopheles gambiae ORF1 protein.
          Length = 613

 Score = 27.1 bits (57), Expect = 0.91
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 103 TGERLIACYHCGQHFANNRKLRDHLRRQNV 132
           T +  + CY C +H  N R  R  + RQNV
Sbjct: 544 TPKEHLRCYRCLEHGHNARDCRSPVDRQNV 573


>AY785360-1|AAV52864.1|  759|Anopheles gambiae male-specific
           transcription factor FRU-MB protein.
          Length = 759

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 12/49 (24%), Positives = 20/49 (40%), Gaps = 2/49 (4%)

Query: 139 KCTMCGIPCATEYLLNEHARQHVSAHVCALCDMTATSPAALAQHVRYRH 187
           +C +CG      ++ N +         C LC  T T    L  H +++H
Sbjct: 501 RCKLCGK--VVTHIRNHYHVHFPGRFECPLCRATYTRSDNLRTHCKFKH 547


  Database: mosquito
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 516,269
  Number of sequences in database:  2123
  
Lambda     K      H
   0.324    0.135    0.437 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 401,586
Number of Sequences: 2123
Number of extensions: 15796
Number of successful extensions: 50
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 31
Number of HSP's gapped (non-prelim): 6
length of query: 400
length of database: 516,269
effective HSP length: 65
effective length of query: 335
effective length of database: 378,274
effective search space: 126721790
effective search space used: 126721790
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 49 (23.8 bits)