Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001602-TA|BGIBMGA001602-PA|IPR007087|Zinc finger,
C2H2-type
(400 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein ... 58 1e-08
At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein ... 50 4e-06
At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein ... 48 8e-06
At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein ... 45 8e-05
At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein ... 45 8e-05
At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein ... 37 0.027
At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50... 33 0.44
At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705... 31 1.0
At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein ... 30 2.4
At5g52010.1 68418.m06454 zinc finger (C2H2 type) family protein ... 30 3.1
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 29 5.5
At1g10450.1 68414.m01176 paired amphipathic helix repeat-contain... 29 5.5
At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containi... 29 7.2
At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein ... 29 7.2
At1g73620.1 68414.m08523 thaumatin-like protein, putative / path... 29 7.2
At5g61190.1 68418.m07676 zinc finger protein-related contains Pf... 28 9.5
At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein ... 28 9.5
At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein ... 28 9.5
>At4g06634.1 68417.m01050 zinc finger (C2H2 type) family protein
contains Pfam PF00096: Zinc finger, C2H2 type
Length = 387
Score = 58.0 bits (134), Expect = 1e-08
Identities = 33/119 (27%), Positives = 55/119 (46%), Gaps = 8/119 (6%)
Query: 48 ICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCGAWFTTKALLGAHVRSHTGERL 107
+C + C + F + L H+ H++ +++C GCG F + L H HTGER
Sbjct: 80 LCSYDGCGKTFFDVSALRKHS--HIHGERQYVCDQEGCGKKFLDSSKLKRHYLIHTGERN 137
Query: 108 IACYH--CGQHFANNRKLRDHLRRQNVDPESPFKCTMCGIPCATEYLLNEHARQHVSAH 164
C + CG+ F+ + LR H++ + E+ C G C Y + HV+A+
Sbjct: 138 YICTYEGCGKAFSLDFNLRSHMKTHS--QENYHICPYSG--CVKRYAHEYKLKNHVAAY 192
Score = 46.0 bits (104), Expect = 4e-05
Identities = 31/95 (32%), Positives = 44/95 (46%), Gaps = 9/95 (9%)
Query: 78 FLCSWAGCGAWFTTKALLGAHVRSHTGERLIACYH--CGQHFANNRKLRDHLRRQNVDPE 135
FLCS+ GCG F + L H H GER C CG+ F ++ KL+ H E
Sbjct: 79 FLCSYDGCGKTFFDVSALRKHSHIH-GERQYVCDQEGCGKKFLDSSKLKRHYLIHT--GE 135
Query: 136 SPFKCTM--CGIPCATEYLLNEHARQH--VSAHVC 166
+ CT CG + ++ L H + H + H+C
Sbjct: 136 RNYICTYEGCGKAFSLDFNLRSHMKTHSQENYHIC 170
>At5g04240.1 68418.m00414 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domians PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1327
Score = 49.6 bits (113), Expect = 4e-06
Identities = 30/93 (32%), Positives = 40/93 (43%), Gaps = 4/93 (4%)
Query: 27 LERCKKNSTKRNQLPNLPNEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCG 86
LE CK + +L C C +KF + + L H ++H + F CSW GC
Sbjct: 1219 LEGCKMTFESKAKLQTHKRNR-CTHEGCGKKFRAHKYLVLHQRVHKD-ERPFECSWKGCS 1276
Query: 87 AWFTTKALLGAHVRSHTGERLIACY--HCGQHF 117
F + H+R HTGER C CG F
Sbjct: 1277 MTFKWQWARTEHLRLHTGERPYICKVDGCGLSF 1309
Score = 33.9 bits (74), Expect = 0.19
Identities = 31/113 (27%), Positives = 51/113 (45%), Gaps = 17/113 (15%)
Query: 80 CSWAGCGAWFTTKALLGAHVRSHTGERLIACYH--CGQHFANNRKLRDHLRRQNVDPESP 137
C GC F +KA L H R+ C H CG+ F ++ L H +R + D E P
Sbjct: 1217 CYLEGCKMTFESKAKLQTHKRNR-------CTHEGCGKKFRAHKYLVLH-QRVHKD-ERP 1267
Query: 138 FKCTM--CGIPCATEYLLNEHARQHVS--AHVCAL--CDMTATSPAALAQHVR 184
F+C+ C + ++ EH R H ++C + C ++ + ++H R
Sbjct: 1268 FECSWKGCSMTFKWQWARTEHLRLHTGERPYICKVDGCGLSFRFVSDYSRHRR 1320
>At3g48430.1 68416.m05287 zinc finger (C2H2 type) family protein /
transcription factor jumonji (jmj) family protein
contains Pfam domains PF02375: jmjN domain, PF02373: jmjC
domain and PF00096: Zinc finger, C2H2 type
Length = 1354
Score = 48.4 bits (110), Expect = 8e-06
Identities = 31/105 (29%), Positives = 42/105 (40%), Gaps = 4/105 (3%)
Query: 27 LERCKKNSTKRNQLPNLPNEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCG 86
+E C + + QL L +IC C + F S + L H ++H + C W GC
Sbjct: 1241 MEGCTMSFSSEKQLM-LHKRNICPIKGCGKNFFSHKYLVQHQRVHSD-DRPLKCPWKGCK 1298
Query: 87 AWFTTKALLGAHVRSHTGERLIACYH--CGQHFANNRKLRDHLRR 129
F H+R HTG R C CGQ F H R+
Sbjct: 1299 MTFKWAWSRTEHIRVHTGARPYVCAEPDCGQTFRFVSDFSRHKRK 1343
>At1g72050.2 68414.m08328 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 412
Score = 45.2 bits (102), Expect = 8e-05
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 48 ICMWTDCNRKFNSIQILFDHAKLHVNY-SEKFLCSWAGCGAWFTTKALLGAHVRSHTGER 106
+C C + F L H HV S + CS GC +FT + L +H+RS +
Sbjct: 216 VCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRS--CHQ 273
Query: 107 LIACYHCG-QHFANNRKLRDHLRRQNVDPE-SPFKCTMCGIPCATEYLLNEHARQHVSA 163
I C CG +H N ++ HLR + D KC + G C++ + + ++H+ A
Sbjct: 274 HINCEICGSKHLKKN--IKRHLRTHDEDSSPGEIKCEVEG--CSSTFSKASNLQKHMKA 328
Score = 37.5 bits (83), Expect = 0.016
Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)
Query: 85 CGAWFTTKALLGAHVRSHTGERLIACYHCGQHFANNRKLRDHLRRQNVDPESP-FKCTMC 143
CGA F A L H++SH+ ER CY A + + +DHL R + + FKC
Sbjct: 71 CGAEFKKPAHLKQHMQSHSLERSFTCY--VDDCAASYRRKDHLNRHLLTHKGKLFKCPKE 128
Query: 144 GIPCATEYLLNEHARQHVSAH 164
C +E+ + + +HV +
Sbjct: 129 N--CKSEFSVQGNVGRHVKKY 147
Score = 33.9 bits (74), Expect = 0.19
Identities = 26/99 (26%), Positives = 37/99 (37%), Gaps = 20/99 (20%)
Query: 138 FKCTMCGIPCATEYLLNEHARQH--------------------VSAHVCALCDMTATSPA 177
+ C CGI + YL+ +H + H S H C C PA
Sbjct: 20 YLCQYCGISRSKNYLITKHIQSHHQMELEEERDDEACEVDEESSSNHTCQECGAEFKKPA 79
Query: 178 ALAQHVRYRHLPRAPHHACTRCAYRAVTKNDLQKHLMIH 216
L QH++ L R+ CA K+ L +HL+ H
Sbjct: 80 HLKQHMQSHSLERSFTCYVDDCAASYRRKDHLNRHLLTH 118
Score = 31.5 bits (68), Expect = 1.0
Identities = 15/55 (27%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Query: 110 CYHCGQHFANNRKLRDHLRRQNVDPESPFKCTMCGIPCATEYLLNEHARQHVSAH 164
C CG F L+ H++ ++ E F C + CA Y +H +H+ H
Sbjct: 68 CQECGAEFKKPAHLKQHMQSHSL--ERSFTCYV--DDCAASYRRKDHLNRHLLTH 118
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 27 LERCKKNSTKRNQLPNLPNEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCG 86
L++ K + + + P E C C+ F+ L H K + F+C + GCG
Sbjct: 285 LKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCG 344
Query: 87 AWFTTKALLGAHVRS 101
F K + H S
Sbjct: 345 MRFAYKHVRNKHENS 359
Score = 31.1 bits (67), Expect = 1.4
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 45 NEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCGAWFTTKALLGAHVRSHTG 104
+ H C +C +F L H + H + F C C A + K L H+ +H G
Sbjct: 64 SNHTCQ--ECGAEFKKPAHLKQHMQSH-SLERSFTCYVDDCAASYRRKDHLNRHLLTHKG 120
Query: 105 ERLIAC--YHCGQHFANNRKLRDHLRR 129
+L C +C F+ + H+++
Sbjct: 121 -KLFKCPKENCKSEFSVQGNVGRHVKK 146
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 76 EKFLCSWAGCGAWFTTKALLGAHVRSHTGERLIACY----HCGQHFANNRKLRDHLRRQN 131
++ +C GCG F + L H SH + + C ++F N L+ H+R
Sbjct: 213 KQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIR--- 269
Query: 132 VDPESPFKCTMCGIPCATEYLLNEHARQH 160
C +CG + + H R H
Sbjct: 270 -SCHQHINCEICGSKHLKKN-IKRHLRTH 296
>At1g72050.1 68414.m08329 zinc finger (C2H2 type) family protein
contains multiple zinc finger domains: PF00096: Zinc
finger, C2H2 type
Length = 324
Score = 45.2 bits (102), Expect = 8e-05
Identities = 34/119 (28%), Positives = 54/119 (45%), Gaps = 9/119 (7%)
Query: 48 ICMWTDCNRKFNSIQILFDHAKLHVNY-SEKFLCSWAGCGAWFTTKALLGAHVRSHTGER 106
+C C + F L H HV S + CS GC +FT + L +H+RS +
Sbjct: 128 VCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIRS--CHQ 185
Query: 107 LIACYHCG-QHFANNRKLRDHLRRQNVDPE-SPFKCTMCGIPCATEYLLNEHARQHVSA 163
I C CG +H N ++ HLR + D KC + G C++ + + ++H+ A
Sbjct: 186 HINCEICGSKHLKKN--IKRHLRTHDEDSSPGEIKCEVEG--CSSTFSKASNLQKHMKA 240
Score = 31.5 bits (68), Expect = 1.0
Identities = 19/75 (25%), Positives = 30/75 (40%)
Query: 27 LERCKKNSTKRNQLPNLPNEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCG 86
L++ K + + + P E C C+ F+ L H K + F+C + GCG
Sbjct: 197 LKKNIKRHLRTHDEDSSPGEIKCEVEGCSSTFSKASNLQKHMKAVHDDIRPFVCGFPGCG 256
Query: 87 AWFTTKALLGAHVRS 101
F K + H S
Sbjct: 257 MRFAYKHVRNKHENS 271
Score = 28.7 bits (61), Expect = 7.2
Identities = 21/89 (23%), Positives = 34/89 (38%), Gaps = 9/89 (10%)
Query: 76 EKFLCSWAGCGAWFTTKALLGAHVRSHTGERLIACY----HCGQHFANNRKLRDHLRRQN 131
++ +C GCG F + L H SH + + C ++F N L+ H+R
Sbjct: 125 KQVVCKEIGCGKAFKYPSQLQKHQDSHVKLDSVEAFCSEPGCMKYFTNEECLKSHIR--- 181
Query: 132 VDPESPFKCTMCGIPCATEYLLNEHARQH 160
C +CG + + H R H
Sbjct: 182 -SCHQHINCEICGSKHLKKN-IKRHLRTH 208
>At5g56200.1 68418.m07012 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 493
Score = 36.7 bits (81), Expect = 0.027
Identities = 24/83 (28%), Positives = 40/83 (48%), Gaps = 10/83 (12%)
Query: 46 EHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCGAWFTTKALLGAHVRSHTGE 105
+HIC +C ++F S + L H ++HV + KF + K + G RS G+
Sbjct: 78 KHICC--ECGKRFVSGKALGGHKRIHVLETRKF--------SMMRPKMVSGMVGRSERGD 127
Query: 106 RLIACYHCGQHFANNRKLRDHLR 128
+AC C + F + + L H+R
Sbjct: 128 LEVACCVCYKKFTSMKALYGHMR 150
>At1g18250.1 68414.m02276 thaumatin, putative identical to SP|P50699
Thaumatin-like protein precursor {Arabidopsis thaliana};
strong similarity to pathogenesis-related group 5
protein GI:2749943 from [Brassica rapa]
Length = 243
Score = 32.7 bits (71), Expect = 0.44
Identities = 13/31 (41%), Positives = 19/31 (61%)
Query: 80 CSWAGCGAWFTTKALLGAHVRSHTGERLIAC 110
CS+AGC + +G VRS G+R++AC
Sbjct: 144 CSYAGCVSDLNQMCPVGLQVRSRNGKRVVAC 174
>At2g15695.1 68415.m01797 expressed protein contains Pfam PF05705:
Eukaryotic protein of unknown function (DUF829)
Length = 420
Score = 31.5 bits (68), Expect = 1.0
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 183 VRYRHLPRAPHHACTRCAYRAVTKNDLQKHLMIH 216
V++++ P A H+A YRAV N L+K + +H
Sbjct: 246 VKWKNSPHAGHYAHNPIQYRAVISNFLEKAISVH 279
>At2g37430.1 68415.m04590 zinc finger (C2H2 type) family protein
(ZAT11) contains Pfam domain, PF00096: Zinc finger, C2H2
type
Length = 178
Score = 30.3 bits (65), Expect = 2.4
Identities = 24/93 (25%), Positives = 41/93 (44%), Gaps = 11/93 (11%)
Query: 95 LGAHVRSHTGERLIACYHCGQHFANNRKLRDHLRRQNVDPESPFKCTMCGIPCATEYLLN 154
L H SHT + C C + F++ + L H R + P+ + ++L N
Sbjct: 35 LNQHTESHTSNQF-ECKTCNKRFSSFQALGGH-RASHKKPKLTVEQK------DVKHLSN 86
Query: 155 EHARQHVSAHVCALCDMTATSPAALAQHVRYRH 187
++ H H C++C + + AL H+R RH
Sbjct: 87 DYKGNHF--HKCSICSQSFGTGQALGGHMR-RH 116
Score = 28.3 bits (60), Expect = 9.5
Identities = 27/100 (27%), Positives = 40/100 (40%), Gaps = 15/100 (15%)
Query: 64 LFDHAKLHVNYSEKFLCSWAGCGAWFTTKALLGAHVRSHTGERLIACYHCGQHFANNRKL 123
L H + H S +F C C F++ LG H SH +L +H +N+ K
Sbjct: 35 LNQHTESHT--SNQFECKT--CNKRFSSFQALGGHRASHKKPKLTVEQKDVKHLSNDYK- 89
Query: 124 RDHLRRQNVDPESPFKCTMCGIPCATEYLLNEHARQHVSA 163
+H KC++C T L H R+H S+
Sbjct: 90 GNHFH----------KCSICSQSFGTGQALGGHMRRHRSS 119
>At5g52010.1 68418.m06454 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 396
Score = 29.9 bits (64), Expect = 3.1
Identities = 12/32 (37%), Positives = 17/32 (53%)
Query: 128 RRQNVDPESPFKCTMCGIPCATEYLLNEHARQ 159
R+ V P P+ C +CG C T L +H +Q
Sbjct: 142 RKGEVTPIDPYICGVCGRKCKTNLDLKKHFKQ 173
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 29.1 bits (62), Expect = 5.5
Identities = 21/84 (25%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 270 GNTLTSHLVKVHGVQWPYGHSRFRYQKSEDGVYRLTTTRYEVLEVSNKIFARDSGPKQSL 329
G +T +L ++ +++P+ SRF ++K+ED +L Y + +++I G K++
Sbjct: 203 GYHVTDYLKQLLSLKYPFHSSRFTWEKAED--LKLEHC-YIAPDYASEIRLFQEGRKEAE 259
Query: 330 NENLDFKLKQVAEPTFDTPRRFEI 353
+ ++L + PT P EI
Sbjct: 260 EKTSYWQLPWIPPPTEVPPSEEEI 283
>At1g10450.1 68414.m01176 paired amphipathic helix repeat-containing
protein similar to Sin3 protein [Yarrowia lipolytica]
GI:18076824; contains Pfam profile PF02671: Paired
amphipathic helix repeat
Length = 1173
Score = 29.1 bits (62), Expect = 5.5
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 272 TLTSHLVKVHGVQWPYGHSRFRYQKSEDGVYRLTTTRYEV 311
TL HLV V Y S R + E+ ++R RYE+
Sbjct: 379 TLNDHLVSVTSGSEDYSFSHMRKNQYEESLFRCEDDRYEM 418
>At4g37170.1 68417.m05262 pentatricopeptide (PPR) repeat-containing
protein contains Pfam profile PF01535: PPR repeat
Length = 691
Score = 28.7 bits (61), Expect = 7.2
Identities = 20/93 (21%), Positives = 34/93 (36%), Gaps = 9/93 (9%)
Query: 29 RCKKNSTKRNQLPNLPNEHICMWTDCNRKFNSIQILFDHAKLHVNYSEKFLCSWAGCGAW 88
+C R +PN +C W + + +L + KL +EK SW
Sbjct: 132 KCGSLVDARKVFDEMPNRDLCSWNVMVNGYAEVGLLEEARKLFDEMTEKDSYSWT----- 186
Query: 89 FTTKALLGAHVRSHTGERLIACYHCGQHFANNR 121
A++ +V+ E + Y Q N+R
Sbjct: 187 ----AMVTGYVKKDQPEEALVLYSLMQRVPNSR 215
>At2g36480.1 68415.m04477 zinc finger (C2H2-type) family protein
weak similarity to S-locus protein 4 (GI:6069478)
[Brassica rapa]; weak similarity to Pre-mRNA cleavage
complex II protein Pcf11 (Fragment) (Swiss-Prot:O94913)
[Homo sapiens]; contains Prosite PS00028: Zinc finger,
C2H2 type, domain
Length = 828
Score = 28.7 bits (61), Expect = 7.2
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 194 HACTRCAYRAVTKNDLQKHLMIH 216
H CT C+ R K +L +H+ +H
Sbjct: 679 HLCTSCSVRLKQKEELDRHMELH 701
>At1g73620.1 68414.m08523 thaumatin-like protein, putative /
pathogenesis-related protein, putative strong similarity
to SP|P50699 Thaumatin-like protein precursor
{Arabidopsis thaliana}, pathogenesis-related group 5
protein [Brassica rapa] GI:2749943; contains Pfam
profile: PF00314 thaumatin family
Length = 264
Score = 28.7 bits (61), Expect = 7.2
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 80 CSWAGCGAWFTTKALLGAHVRSHTGERLIAC 110
C++AGC + +G VRS G +++AC
Sbjct: 165 CTYAGCVSDLNRMCPVGLQVRSRDGTQVVAC 195
>At5g61190.1 68418.m07676 zinc finger protein-related contains Pfam
profile PF04396: Protein of unknown function DUF537,
weak hit to PF00096: Zinc finger C2H2 type
Length = 977
Score = 28.3 bits (60), Expect = 9.5
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 3/53 (5%)
Query: 120 NRKLRDHLRRQNVDPESPFKCTMCGIPCATEYLLNEHARQHVSAHVCALCDMT 172
N+K+ R Q + F C MC + C ++ + N H R A++ + + T
Sbjct: 353 NKKVMIESRAQ---ANAEFVCLMCNVVCQSQIVFNSHLRGKKHANMLSQSEAT 402
>At5g04390.1 68418.m00431 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 362
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 85 CGAWFTTKALLGAHVRSHTG 104
CGA FT+ LG H+R H G
Sbjct: 234 CGAEFTSGQALGGHMRRHRG 253
>At3g10470.1 68416.m01255 zinc finger (C2H2 type) family protein
contains Pfam domain, PF00096: Zinc finger, C2H2 type
Length = 398
Score = 28.3 bits (60), Expect = 9.5
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 85 CGAWFTTKALLGAHVRSHTG 104
CGA FT+ LG H+R H G
Sbjct: 266 CGAEFTSGQALGGHMRRHRG 285
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.324 0.135 0.437
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,667,954
Number of Sequences: 28952
Number of extensions: 329492
Number of successful extensions: 1065
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1009
Number of HSP's gapped (non-prelim): 51
length of query: 400
length of database: 12,070,560
effective HSP length: 83
effective length of query: 317
effective length of database: 9,667,544
effective search space: 3064611448
effective search space used: 3064611448
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 60 (28.3 bits)
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