GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001601-TA|BGIBMGA001601-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (315 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory pro...    23   2.2  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    23   2.9  
EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggeri...    23   2.9  
AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like prote...    23   3.9  

>DQ855499-1|ABH88186.1|  124|Tribolium castaneum chemosensory
          protein 13 protein.
          Length = 124

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 10/18 (55%), Positives = 12/18 (66%)

Query: 53 YNEGLDVLAKSERLNKVF 70
          YN+ LD   KSERL K +
Sbjct: 24 YNDELDAALKSERLMKSY 41


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 219 AAEVFPTNYRTTLMAMC---STLGRTGSTVAP 247
           ++ VFP   RTT M  C     LG  G+ + P
Sbjct: 59  SSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVP 90



 Score = 21.8 bits (44), Expect = 6.7
 Identities = 8/16 (50%), Positives = 12/16 (75%)

Query: 22  LLFIIYTPAVLVFVYI 37
           L+F I+  A+L+ VYI
Sbjct: 243 LIFFIFPLAILIIVYI 258


>EF222293-1|ABN79653.1|  434|Tribolium castaneum ecdysis triggering
           hormone receptorisoform A protein.
          Length = 434

 Score = 23.0 bits (47), Expect = 2.9
 Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 3/32 (9%)

Query: 219 AAEVFPTNYRTTLMAMC---STLGRTGSTVAP 247
           ++ VFP   RTT M  C     LG  G+ + P
Sbjct: 59  SSSVFPNYIRTTSMVFCIIIMCLGVIGNVMVP 90


>AJ969955-1|CAI94742.1|  160|Tribolium castaneum torso-like
          protein protein.
          Length = 160

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 1/41 (2%)

Query: 58 DVLAKSERLNKVFVPKDHYEQVEKHATKQRDDRKCESMARN 98
          D LAK+  +N  FV K+H   + + A + RD  K   +  N
Sbjct: 22 DTLAKNLGINSSFVHKEHCYVLVRLA-RFRDSVKLSKIPNN 61


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.325    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 74,617
Number of Sequences: 317
Number of extensions: 3295
Number of successful extensions: 11
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 6
Number of HSP's gapped (non-prelim): 5
length of query: 315
length of database: 114,650
effective HSP length: 57
effective length of query: 258
effective length of database: 96,581
effective search space: 24917898
effective search space used: 24917898
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 43 (21.4 bits)