GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001601-TA|BGIBMGA001601-PA|IPR007114|Major facilitator
superfamily, IPR011701|Major facilitator superfamily MFS_1
         (315 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    28   0.092
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    24   2.0  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 28.3 bits (60), Expect = 0.092
 Identities = 16/51 (31%), Positives = 28/51 (54%), Gaps = 2/51 (3%)

Query: 172 RVIAVAFLMTGLILINYGFVPSGNWSILLY--LGGKFFITLAYNSLYVFAA 220
           R++ V  L  G +LI+ G VP  N +++L   +    +IT+ Y+ L +  A
Sbjct: 56  RIVLVILLRAGYVLIHIGSVPVNNINLILLQNIIDICWITMVYSLLGIIIA 106


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.8 bits (49), Expect = 2.0
 Identities = 13/35 (37%), Positives = 18/35 (51%), Gaps = 1/35 (2%)

Query: 5   GGVAVTLLSWWLQNWR-YLLFIIYTPAVLVFVYIW 38
           G  +V  +S+ LQ    Y L  +Y P VL+ V  W
Sbjct: 229 GEFSVLQVSFNLQRHTGYFLIQVYVPCVLIVVLSW 263


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.325    0.138    0.425 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 89,743
Number of Sequences: 429
Number of extensions: 3732
Number of successful extensions: 11
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 9
Number of HSP's gapped (non-prelim): 2
length of query: 315
length of database: 140,377
effective HSP length: 58
effective length of query: 257
effective length of database: 115,495
effective search space: 29682215
effective search space used: 29682215
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 44 (21.8 bits)