GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001599-TA|BGIBMGA001599-PA|IPR005829|Sugar transporter
superfamily, IPR007114|Major facilitator superfamily, IPR011701|Major
facilitator superfamily MFS_1
         (438 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin prot...    23   3.8  
AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   3.8  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    22   8.9  

>AB073998-1|BAC76402.1|  339|Apis mellifera preprotachykinin
           protein.
          Length = 339

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 2   FDNHLREKCDTYVYSDEDSAVKDFNLGCENWKRTLIG 38
           FD++L    + + Y    +  +D   G E++KR  +G
Sbjct: 222 FDDYLDYAINPFDYEKRSTDFQDVESGSESFKRARMG 258


>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 10/37 (27%), Positives = 19/37 (51%)

Query: 2   FDNHLREKCDTYVYSDEDSAVKDFNLGCENWKRTLIG 38
           FD++L    + + Y    +  +D   G E++KR  +G
Sbjct: 222 FDDYLDYAINPFDYEKRSTDFQDVESGSESFKRARMG 258


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 22.2 bits (45), Expect = 8.9
 Identities = 6/28 (21%), Positives = 15/28 (53%)

Query: 306 TMYILSAILCIGLAFIPKDKAWWSLIVY 333
           ++ ++  +L +GL     +K WW   ++
Sbjct: 3   SLVVVVLLLAVGLGAGQNNKGWWKNAIF 30


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.326    0.138    0.419 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,624
Number of Sequences: 429
Number of extensions: 4444
Number of successful extensions: 8
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 5
Number of HSP's gapped (non-prelim): 3
length of query: 438
length of database: 140,377
effective HSP length: 60
effective length of query: 378
effective length of database: 114,637
effective search space: 43332786
effective search space used: 43332786
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.6 bits)
S2: 45 (22.2 bits)