GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001598-TA|BGIBMGA001598-PA|IPR007110|Immunoglobulin-
like, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2
         (221 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.06c |pit1||serine/threonine protein kinase Pit1|Schizosa...    27   2.2  
SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide mc...    25   8.8  
SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide mc...    25   8.8  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    25   8.8  

>SPAC3C7.06c |pit1||serine/threonine protein kinase
           Pit1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 650

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 5/62 (8%)

Query: 3   DIISDDASGDVSVQELENATLTCKATGHPPPKITWRREDHEPILLKKPMSRDFDKVENYV 62
           D+IS   S      + EN ++  +++ + P     R  +H P L  K + RD   V NY 
Sbjct: 518 DLISPQLSILSHEDKRENQSVNSESSKYSP-----RSSNHSPTLHSKDLHRDMATVNNYA 572

Query: 63  GS 64
            S
Sbjct: 573 KS 574


>SPBC23G7.09 |matmc_2|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 15  VQELENATLTCKATGHPPPK-ITWRREDHEPILLKKPMSRDFDKVENYVGSSLPLWRVDR 73
           ++ L   T + + T  PP   I +R+E H  +L   P S +  +V   VG    +WR + 
Sbjct: 90  LKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNP-SINNSQVSKLVGE---MWRNES 145

Query: 74  RQM 76
           +++
Sbjct: 146 KEV 148


>SPBC1711.02 |matmc_1|matmc|mating-type m-specific polypeptide
           mc|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 17/63 (26%), Positives = 31/63 (49%), Gaps = 5/63 (7%)

Query: 15  VQELENATLTCKATGHPPPK-ITWRREDHEPILLKKPMSRDFDKVENYVGSSLPLWRVDR 73
           ++ L   T + + T  PP   I +R+E H  +L   P S +  +V   VG    +WR + 
Sbjct: 90  LKSLRKDTTSTERTPRPPNAFILYRKEKHATLLKSNP-SINNSQVSKLVGE---MWRNES 145

Query: 74  RQM 76
           +++
Sbjct: 146 KEV 148


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)

Query: 144 LLDGPKYTIREEKASYK-VSMWLT-IRQFSRNDIGT 177
           LL  P Y I EEK S++ +  W T I  FS +   T
Sbjct: 361 LLSFPGYAIVEEKVSWRTLEFWTTLIEDFSMSKAAT 396


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,097,236
Number of Sequences: 5004
Number of extensions: 45951
Number of successful extensions: 84
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 83
Number of HSP's gapped (non-prelim): 4
length of query: 221
length of database: 2,362,478
effective HSP length: 70
effective length of query: 151
effective length of database: 2,012,198
effective search space: 303841898
effective search space used: 303841898
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 52 (25.0 bits)