GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001598-TA|BGIBMGA001598-PA|IPR007110|Immunoglobulin-
like, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2
         (221 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0802 + 6246267-6247541,6247625-6247682,6247806-6248129,624...    34   0.080
06_02_0047 - 10938480-10938599,10939244-10939405,10939481-109396...    30   1.7  
10_06_0177 + 11500330-11500755,11500937-11501383,11501651-11501764     28   6.9  
03_05_0165 + 21435948-21436144,21436234-21436318,21436690-214367...    28   6.9  
09_02_0389 - 8456957-8459917,8461941-8462267                           27   9.1  

>01_01_0802 +
           6246267-6247541,6247625-6247682,6247806-6248129,
           6248321-6248355
          Length = 563

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 1/69 (1%)

Query: 7   DDASGDVSVQELENATLT-CKATGHPPPKITWRREDHEPILLKKPMSRDFDKVENYVGSS 65
           D+ + D+ +++ E+A L   +    PP + T    + E I ++ P     D  E YVGSS
Sbjct: 395 DEMNHDIELEKTEHARLDEVEQDQMPPVQETLHNPEPESIDIEPPKENTADDNERYVGSS 454

Query: 66  LPLWRVDRR 74
            P+   D++
Sbjct: 455 SPVHLEDQK 463


>06_02_0047 -
           10938480-10938599,10939244-10939405,10939481-10939629,
           10939753-10939912
          Length = 196

 Score = 29.9 bits (64), Expect = 1.7
 Identities = 24/69 (34%), Positives = 39/69 (56%), Gaps = 6/69 (8%)

Query: 30  HPPPKITWRREDHEPIL-LK---KPMSRDFDKVENYVGSSLPLWRVDRRQMGAFLCIASN 85
           H   K TW +E  + I+ LK   KP+ ++F++V+N +GS+ PL  V R  +     I+ N
Sbjct: 126 HILAKYTWAKEAQKKIVKLKEEGKPLPKNFNEVKNLMGST-PL-DVGRSNLEKSGQISRN 183

Query: 86  DVPPAVSKR 94
            + P  SK+
Sbjct: 184 AMCPCGSKK 192


>10_06_0177 + 11500330-11500755,11500937-11501383,11501651-11501764
          Length = 328

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/80 (22%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 15  VQELENATLTCKATGHPPPKITWRREDHEPILLKKPMSRDFDKVENYVGSSLPLWRVDRR 74
           V + ++A+ + K    PP K        +    K   +R+  ++E+   + + + R  RR
Sbjct: 65  VDQDQHASSSSKVAARPPVKAAAAAGKRKRRRAKAAKNRE--EIESQRMTHIAVERNRRR 122

Query: 75  QMGAFLCIASNDVPPAVSKR 94
           QM  +L +  + +PP+ ++R
Sbjct: 123 QMNEYLAVLRSLMPPSYAQR 142


>03_05_0165 +
           21435948-21436144,21436234-21436318,21436690-21436768,
           21436892-21437005,21437249-21437361,21437570-21437677,
           21437760-21437879
          Length = 271

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 26/91 (28%), Positives = 34/91 (37%), Gaps = 8/91 (8%)

Query: 65  SLPLWRVDRRQMGAFLCIASNDVPPAVSKRITLLVNFAPTVKVPNQLLGAPL--GTDVKL 122
           SLP W               N +PP+  + + L  N A T   PN   G     G +  +
Sbjct: 68  SLPTWAEFELGKAPVYWKTMNGLPPSAGEGLILFYNPAATKMTPNAQFGIAFNGGFNQPI 127

Query: 123 KCYVEAYPNTINYWIKNRGEMLLDGPKYTIR 153
            C  E    T    ++ RG    D P YTIR
Sbjct: 128 MCGGEPRQMT----LQERGS--ADPPIYTIR 152


>09_02_0389 - 8456957-8459917,8461941-8462267
          Length = 1095

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 47  LKKPMSRDFDKVENYVGSSLPLWRVDRRQM 76
           L+ P   ++ K+ +Y GSSLP W +  R +
Sbjct: 741 LQPPQCLEYLKIASYYGSSLPDWILQLRNL 770


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,137,999
Number of Sequences: 37544
Number of extensions: 298137
Number of successful extensions: 590
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 5
length of query: 221
length of database: 14,793,348
effective HSP length: 79
effective length of query: 142
effective length of database: 11,827,372
effective search space: 1679486824
effective search space used: 1679486824
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)