GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001598-TA|BGIBMGA001598-PA|IPR007110|Immunoglobulin-
like, IPR013151|Immunoglobulin, IPR003599|Immunoglobulin subtype,
IPR003598|Immunoglobulin subtype 2
         (221 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g09600.1 68416.m01140 myb family transcription factor contain...    29   1.9  
At2g46020.2 68415.m05725 transcription regulatory protein SNF2, ...    27   7.6  
At2g46020.1 68415.m05724 transcription regulatory protein SNF2, ...    27   7.6  
At2g32590.1 68415.m03979 barren family protein low similarity to...    27   7.6  

>At3g09600.1 68416.m01140 myb family transcription factor contains
           Pfam profile: PF00249 myb-like DNA-binding domain
          Length = 298

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 26/99 (26%), Positives = 44/99 (44%), Gaps = 12/99 (12%)

Query: 1   PPDIISDDASGDVSVQELENATLTCKATGHPPPKITWRREDHEPILLKKPM-SRDFDKVE 59
           PP   S DA  + S +++       K+      + +W  E+H+  L    +  RD+ K+E
Sbjct: 16  PPPPTSTDAVAEGSSKKVRKPYTITKS------RESWTEEEHDKFLEALQLFDRDWKKIE 69

Query: 60  NYVGSSLPLWRVDRRQMGAFLCIASN----DVPPAVSKR 94
           ++VGS   + ++       FL +  N     VPP   KR
Sbjct: 70  DFVGSKTVI-QIRSHAQKYFLKVQKNGTLAHVPPPRPKR 107


>At2g46020.2 68415.m05725 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2193

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 115  PLGTDVKLKCYVEAYPNTINYWIKNRGEMLLDGPKYTIREEK-ASYKVSMWLTI 167
            P    V L+C + A  + +  WIK  G + +D     +R +K   Y+  ++ T+
Sbjct: 1221 PAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTL 1274


>At2g46020.1 68415.m05724 transcription regulatory protein SNF2,
            putative similar to SP|P22082 Transcription regulatory
            protein SNF2 (SWI/SNF complex component SNF2)
            {Saccharomyces cerevisiae}; contains Pfam profiles
            PF00271: Helicase conserved C-terminal domain, PF00176:
            SNF2 family N-terminal domain
          Length = 2192

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 14/54 (25%), Positives = 26/54 (48%), Gaps = 1/54 (1%)

Query: 115  PLGTDVKLKCYVEAYPNTINYWIKNRGEMLLDGPKYTIREEK-ASYKVSMWLTI 167
            P    V L+C + A  + +  WIK  G + +D     +R +K   Y+  ++ T+
Sbjct: 1220 PAKVSVVLRCRMSAIQSAVYDWIKATGTLRVDPDDEKLRAQKNPIYQAKIYRTL 1273


>At2g32590.1 68415.m03979 barren family protein low similarity to
           SP|Q9Y7R3 Condensin complex subunit 2 (p105)
           {Schizosaccharomyces pombe}; contains Pfam profile
           PF05786: Barren protein
          Length = 704

 Score = 27.5 bits (58), Expect = 7.6
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)

Query: 3   DIISDDASGDVSVQELENATLTCKATGHPPP--KITWRREDHEPILLKKPMSRDF 55
           D+  D AS  V VQ L+     C    H PP   +  + E+H+    + P SR F
Sbjct: 599 DVQYDKASKQVDVQVLKETLWECLQESHQPPIQNLIVQDEEHQQ---EPPESRSF 650


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.316    0.135    0.406 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,732,511
Number of Sequences: 28952
Number of extensions: 242997
Number of successful extensions: 495
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 495
Number of HSP's gapped (non-prelim): 4
length of query: 221
length of database: 12,070,560
effective HSP length: 78
effective length of query: 143
effective length of database: 9,812,304
effective search space: 1403159472
effective search space used: 1403159472
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 58 (27.5 bits)