Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001597-TA|BGIBMGA001597-PA|undefined
         (155 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)                         29   2.3  
SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)             27   9.2  

>SB_3278| Best HMM Match : ORC2 (HMM E-Value=0)
          Length = 459

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 2/37 (5%)

Query: 111 TEPPVSEGNNPVEENKENGVGKDDENLFPLVVKDKSL 147
           TE    +GN+  ++NKE   GKDDE+    ++  K+L
Sbjct: 76  TEDDTDDGND--DDNKEGSSGKDDESENEKIIVPKAL 110


>SB_10217| Best HMM Match : ubiquitin (HMM E-Value=1.6e-06)
          Length = 479

 Score = 26.6 bits (56), Expect = 9.2
 Identities = 10/23 (43%), Positives = 12/23 (52%)

Query: 113 PPVSEGNNPVEENKENGVGKDDE 135
           PP  +GN  V  N   GV  DD+
Sbjct: 192 PPADQGNEEVRMNAGGGVANDDD 214


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.311    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,327,128
Number of Sequences: 59808
Number of extensions: 78454
Number of successful extensions: 132
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 131
Number of HSP's gapped (non-prelim): 2
length of query: 155
length of database: 16,821,457
effective HSP length: 76
effective length of query: 79
effective length of database: 12,276,049
effective search space: 969807871
effective search space used: 969807871
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)