GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001597-TA|BGIBMGA001597-PA|undefined
         (155 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit...    26   2.2  
SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyce...    25   3.9  
SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element Wtf21|Sc...    25   6.8  
SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual       25   6.8  
SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr 3|...    24   9.0  

>SPBC336.09c |rrn7||RNA polymerase I transcription factor subunit
           Rrn7 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 537

 Score = 26.2 bits (55), Expect = 2.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)

Query: 122 VEENKENGVGKDDENLFPLVVKDKSL 147
           VEEN  N + +   N+FP++ KD  L
Sbjct: 416 VEENNPNNIPEGILNVFPILSKDSHL 441


>SPBC16A3.07c |nrm1||negative regulator of MBF|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 342

 Score = 25.4 bits (53), Expect = 3.9
 Identities = 11/30 (36%), Positives = 16/30 (53%)

Query: 118 GNNPVEENKENGVGKDDENLFPLVVKDKSL 147
           G  P  E  E G GK+ ++LFP+    + L
Sbjct: 17  GERPTNEVYEYGKGKNVQHLFPITPMQRPL 46


>SPCC1739.15 |wtf21|SPCC1739.15, SPCC1739.15|wtf element
           Wtf21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/34 (32%), Positives = 18/34 (52%), Gaps = 3/34 (8%)

Query: 113 PPVSEG---NNPVEENKENGVGKDDENLFPLVVK 143
           PP S+    NNP   ++EN   +  +N  P ++K
Sbjct: 43  PPYSDHALVNNPPNTHRENNPSRSTDNSSPFLIK 76


>SPAC3H8.09c |nab3||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 738

 Score = 24.6 bits (51), Expect = 6.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)

Query: 109 VKTEPPVSEGNNPVEENKENGVGKD 133
           V+   P S  N PVE+  EN   KD
Sbjct: 173 VEQNKPFSISNEPVEQETENSSTKD 197


>SPCC191.07 |cyc1||cytochrome c |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 109

 Score = 24.2 bits (50), Expect = 9.0
 Identities = 10/33 (30%), Positives = 18/33 (54%)

Query: 116 SEGNNPVEENKENGVGKDDENLFPLVVKDKSLL 148
           +EG +  E N++ G+  D+E LF  +   K  +
Sbjct: 48  AEGFSYTEANRDKGITWDEETLFAYLENPKKYI 80


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.311    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 460,438
Number of Sequences: 5004
Number of extensions: 11142
Number of successful extensions: 34
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 30
Number of HSP's gapped (non-prelim): 5
length of query: 155
length of database: 2,362,478
effective HSP length: 67
effective length of query: 88
effective length of database: 2,027,210
effective search space: 178394480
effective search space used: 178394480
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 50 (24.2 bits)