GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001597-TA|BGIBMGA001597-PA|undefined
         (155 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878     27   9.0  

>10_08_0166 + 15363630-15365633,15366959-15367496,15367577-15367878
          Length = 947

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 1/28 (3%)

Query: 115 VSEGNNPVEENKE-NGVGKDDENLFPLV 141
           V+ G  P+EE +E  G G DD++ F LV
Sbjct: 551 VTCGRRPIEEEEEVAGAGADDDDRFVLV 578


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.311    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,780,877
Number of Sequences: 37544
Number of extensions: 63565
Number of successful extensions: 84
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 84
Number of HSP's gapped (non-prelim): 1
length of query: 155
length of database: 14,793,348
effective HSP length: 76
effective length of query: 79
effective length of database: 11,940,004
effective search space: 943260316
effective search space used: 943260316
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)