GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001597-TA|BGIBMGA001597-PA|undefined
         (155 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical...    27   6.0  

>AC024200-12|AAF36010.2| 1232|Caenorhabditis elegans Hypothetical
           protein Y71F9AL.17 protein.
          Length = 1232

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)

Query: 112 EPPVSEGNNPVEENKENGVGKDDENLFPLVVKDK 145
           E  V EG  PV+ ++E G   DD+   P V  D+
Sbjct: 875 ELDVDEGEGPVDGDEEGGWDVDDDLALPDVTDDQ 908


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.311    0.129    0.362 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,469,713
Number of Sequences: 27539
Number of extensions: 60101
Number of successful extensions: 135
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 134
Number of HSP's gapped (non-prelim): 1
length of query: 155
length of database: 12,573,161
effective HSP length: 76
effective length of query: 79
effective length of database: 10,480,197
effective search space: 827935563
effective search space used: 827935563
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.8 bits)
S2: 56 (26.6 bits)