Silkworm BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001596-TA|BGIBMGA001596-PA|IPR003736|Phenylacetic acid
degradation-related protein, IPR006683|Thioesterase superfamily
         (175 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    23   1.8  
EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    22   2.4  
AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.           22   2.4  
AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock prote...    21   4.3  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    21   5.6  
AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory recept...    21   5.6  
X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Triboliu...    20   9.9  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    20   9.9  
U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I pr...    20   9.9  

>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 17/58 (29%), Positives = 28/58 (48%), Gaps = 4/58 (6%)

Query: 119 ITVESNLLTGGASSVM----EVILHDGEGAPVAKSTTSFISGSDKFQKILKDNLDFDV 172
           I V   LL  G +S++     +I+H    A VA    + +    KF + ++  L+FDV
Sbjct: 420 IFVLCELLIEGTTSILINVPSLIIHVSTSAYVATVWINSVINRWKFIEFIRKVLEFDV 477


>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 16/67 (23%), Positives = 27/67 (40%), Gaps = 4/67 (5%)

Query: 4   LMEALTNPLNIVDKSITLLQPEPEARAWLATTTSAYPILRCRELKTAHLTEGCLKGSFVV 63
           +++A+   L      I    P+P        +++  P    R+L T      C K  +V 
Sbjct: 374 ILKAIHQTLGGSSNEIVEPVPQPVEEVTQKPSSTKAPAPPSRDLTTTL----CTKAGYVR 429

Query: 64  DPSMCNI 70
           DP  C+I
Sbjct: 430 DPDDCSI 436


>AY321476-1|AAQ23386.1|  253|Tribolium castaneum Ash protein.
          Length = 253

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 3/39 (7%)

Query: 7  ALTNPLNIVDKSITLLQPEPEARAWLATTTSAYPILRCR 45
          ++T P   V +S   L P PE  + L T  S    LRC+
Sbjct: 35 SITQPTKTVIQSKRPLAPAPERTSVLVTNNSD---LRCK 70


>AY769608-1|AAV40984.1|  195|Tribolium castaneum heat shock protein
           70 protein.
          Length = 195

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 12/39 (30%), Positives = 19/39 (48%)

Query: 126 LTGGASSVMEVILHDGEGAPVAKSTTSFISGSDKFQKIL 164
           L GG   V  + + +G    VA S  + + G D  QK++
Sbjct: 27  LGGGTFDVSILTIDNGVFEVVATSGDTHLGGEDFDQKVM 65


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 7/17 (41%), Positives = 10/17 (58%)

Query: 53   TEGCLKGSFVVDPSMCN 69
            ++ C  G +V DP  CN
Sbjct: 1100 SQPCEPGQYVPDPHNCN 1116


>AM292359-1|CAL23171.2|  436|Tribolium castaneum gustatory receptor
           candidate 38 protein.
          Length = 436

 Score = 21.0 bits (42), Expect = 5.6
 Identities = 16/55 (29%), Positives = 20/55 (36%)

Query: 36  TSAYPILRCRELKTAHLTEGCLKGSFVVDPSMCNIGDTLHGGYMASVMDAVSLYA 90
           T   P+L C  +   H+T    K   VV     N    L GG+     D V   A
Sbjct: 189 TVVLPLLACGVMVVTHITMAHFKIIQVVPYCYINCLIYLIGGFWFMQCDVVGKVA 243


>X06905-1|CAA30009.1|  489|Tribolium castaneum protein ( Tribolium
           castaneum mRNAfor alhpa amylase 3'region. ).
          Length = 489

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 91  LISRSDGRLGWTTNMNISYLKPARLGD 117
           L+  S  R  W     +SY+   R GD
Sbjct: 65  LVVTSSNRPWWERYQPVSYILNTRSGD 91


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 91  LISRSDGRLGWTTNMNISYLKPARLGD 117
           L+  S  R  W     +SY+   R GD
Sbjct: 66  LVVTSSNRPWWERYQPVSYILNTRSGD 92


>U04271-1|AAA03708.1|  490|Tribolium castaneum alpha-amylase I
           protein.
          Length = 490

 Score = 20.2 bits (40), Expect = 9.9
 Identities = 9/27 (33%), Positives = 12/27 (44%)

Query: 91  LISRSDGRLGWTTNMNISYLKPARLGD 117
           L+  S  R  W     +SY+   R GD
Sbjct: 66  LVVTSSNRPWWERYQPVSYILNTRSGD 92


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 39,374
Number of Sequences: 317
Number of extensions: 1444
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of query: 175
length of database: 114,650
effective HSP length: 53
effective length of query: 122
effective length of database: 97,849
effective search space: 11937578
effective search space used: 11937578
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)
S2: 40 (20.2 bits)