GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001596-TA|BGIBMGA001596-PA|IPR003736|Phenylacetic acid
degradation-related protein, IPR006683|Thioesterase superfamily
         (175 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces pom...    33   0.024
SPBC31F10.02 |||thioesterase superfamily protein|Schizosaccharom...    26   2.7  
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    26   2.7  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   6.3  
SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.3  

>SPBC26H8.11c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 175

 Score = 33.1 bits (72), Expect = 0.024
 Identities = 10/47 (21%), Positives = 26/47 (55%)

Query: 67  MCNIGDTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKPA 113
           +C   + +HGG++ +++D    + +      ++G T  ++ +Y+ PA
Sbjct: 70  LCGYKNIVHGGFITTMLDEALAFGVFPNFPSKMGVTVQLDTTYVAPA 116


>SPBC31F10.02 |||thioesterase superfamily
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 161

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 1/51 (1%)

Query: 74  LHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKP-ARLGDTITVES 123
           LHGG +A++ D     AL SR     G + +MN ++L+    LG +I + +
Sbjct: 62  LHGGCIAALTDLGGSLALASRGLFISGVSIDMNQTFLQSGGTLGSSILLHA 112


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 12/36 (33%), Positives = 18/36 (50%)

Query: 76  GGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLK 111
           GGYMA +    SL  ++   D  L W   +  S+L+
Sbjct: 130 GGYMAGLKPPFSLRTVLQSRDEDLLWRARLYYSFLQ 165


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 6.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)

Query: 84  DAVSLYALISRSDGRLGWTTNMNI 107
           DA+    L++ +DGR+G TTN+ +
Sbjct: 901 DALYPMELLTLTDGRIGITTNLTL 924


>SPAPB2B4.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 245

 Score = 24.6 bits (51), Expect = 8.3
 Identities = 11/37 (29%), Positives = 18/37 (48%)

Query: 72  DTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNIS 108
           DT+H G +A+ MD V           ++  T N+ +S
Sbjct: 150 DTIHPGLIATCMDEVLAICSFLSLPNKIAVTANLKLS 186


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 783,761
Number of Sequences: 5004
Number of extensions: 28891
Number of successful extensions: 58
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 53
Number of HSP's gapped (non-prelim): 5
length of query: 175
length of database: 2,362,478
effective HSP length: 68
effective length of query: 107
effective length of database: 2,022,206
effective search space: 216376042
effective search space used: 216376042
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 51 (24.6 bits)