GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001596-TA|BGIBMGA001596-PA|IPR003736|Phenylacetic acid
degradation-related protein, IPR006683|Thioesterase superfamily
         (175 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)              54   9e-08
SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.53 
SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)                  30   0.92 
SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)                29   1.6  
SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09)         28   4.9  
SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.5  

>SB_38430| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 834

 Score = 53.6 bits (123), Expect = 9e-08
 Identities = 36/90 (40%), Positives = 50/90 (55%), Gaps = 5/90 (5%)

Query: 73  TLHGGYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKPARLGDTITVESNLLTGG--- 129
           TLHGG  A+++D V+  A+IS++ G+ G + +MNISYLK A  GD +  E      G   
Sbjct: 55  TLHGGLTATMVDDVTTMAIISQT-GQAGVSVDMNISYLKAACRGDEVIFEGICNKAGKNL 113

Query: 130 ASSVMEVILHDGEGAPVAKSTTSFISGSDK 159
           A S  E+ L DG    + K  T +I  S K
Sbjct: 114 AFSTAEIKLKDGTVLAMGKH-TKYIGNSPK 142


>SB_31795| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1525

 Score = 31.1 bits (67), Expect = 0.53
 Identities = 12/28 (42%), Positives = 20/28 (71%)

Query: 116  GDTITVESNLLTGGASSVMEVILHDGEG 143
            GD +T+  NL+TGG + ++E  L +G+G
Sbjct: 1296 GDILTLVRNLVTGGVNPILEEQLAEGDG 1323


>SB_11879| Best HMM Match : WD40 (HMM E-Value=5.8e-21)
          Length = 447

 Score = 30.3 bits (65), Expect = 0.92
 Identities = 10/22 (45%), Positives = 16/22 (72%)

Query: 15 VDKSITLLQPEPEARAWLATTT 36
          +DKS+ + QP+P+   W+ TTT
Sbjct: 28 LDKSLVIWQPDPDTGIWIETTT 49


>SB_26589| Best HMM Match : DUF477 (HMM E-Value=5.2e-18)
          Length = 398

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 17/52 (32%), Positives = 22/52 (42%), Gaps = 1/52 (1%)

Query: 26  PEARAWLATTTSAYPILRCRELKTAHLTEGCLKGSFVVDPSMCNIGDTLHGG 77
           PE    L T    YP +  +++   H T G   GSF+ DP  C       GG
Sbjct: 322 PELAFRLRTLQMLYPSIISQDM-IHHWTVGHYGGSFISDPMFCEARPMFSGG 372


>SB_35518| Best HMM Match : Peptidase_A17 (HMM E-Value=1.3e-09)
          Length = 385

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 6/59 (10%)

Query: 114 RLGDTITVESNLLTG-GASSVMEVILHDGEGAPVAKSTTSFISGSDKFQKILKDNLDFD 171
           +LG  IT++   LT  G  S +  + +D    P+  +  SFISG    Q++ K+NL +D
Sbjct: 223 KLGFCITLKDKPLTRRGILSTLSAV-YD----PLGIAAPSFISGKKILQELCKENLGWD 276


>SB_21308| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2641

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)

Query: 48   KTAHLTEGCLKGSFVVDPSMCNIGDTLHGGYMASVMDAVSLYA 90
            K + L  G  +G+ + DPS C  G T+  G+   + D V  YA
Sbjct: 1901 KESWLDSGDFRGTCISDPSKCPSGLTI--GFKVKLDDEVDKYA 1941


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.317    0.133    0.387 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,663,879
Number of Sequences: 59808
Number of extensions: 205909
Number of successful extensions: 446
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 442
Number of HSP's gapped (non-prelim): 6
length of query: 175
length of database: 16,821,457
effective HSP length: 77
effective length of query: 98
effective length of database: 12,216,241
effective search space: 1197191618
effective search space used: 1197191618
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 57 (27.1 bits)