Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001596-TA|BGIBMGA001596-PA|IPR003736|Phenylacetic acid
degradation-related protein, IPR006683|Thioesterase superfamily
(175 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g04290.1 68414.m00420 thioesterase family protein contains Pf... 48 5e-06
At3g61200.1 68416.m06849 thioesterase family protein contains Pf... 38 0.004
At1g48320.1 68414.m05397 thioesterase family protein similar to ... 36 0.020
At5g48950.1 68418.m06056 thioesterase family protein contains Pf... 33 0.14
At5g48950.2 68418.m06055 thioesterase family protein contains Pf... 32 0.19
At1g10680.1 68414.m01214 P-glycoprotein, putative similar to P-g... 31 0.43
At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to aut... 31 0.57
At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein, pu... 30 0.75
At4g02050.1 68417.m00275 sugar transporter, putative similar to ... 30 1.00
At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to aut... 30 1.00
At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon cat... 29 2.3
At4g11655.1 68417.m01863 transmembrane protein, putative contain... 28 3.0
At5g58880.1 68418.m07377 hypothetical protein 28 4.0
At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon cat... 28 4.0
At1g61360.1 68414.m06915 S-locus lectin protein kinase family pr... 28 4.0
At1g24650.1 68414.m03102 leucine-rich repeat family protein / pr... 27 5.3
At4g38810.2 68417.m05495 calcium-binding EF hand family protein ... 27 7.0
At4g38810.1 68417.m05494 calcium-binding EF hand family protein ... 27 7.0
>At1g04290.1 68414.m00420 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein; EST
gb|T45093 comes from this gene
Length = 155
Score = 47.6 bits (108), Expect = 5e-06
Identities = 29/93 (31%), Positives = 46/93 (49%), Gaps = 1/93 (1%)
Query: 47 LKTAHLTEGCLKGSFVVDPSMCNIGDTLHGGYMASVMDAVSLYALISRSDGRLGWTTNMN 106
LK + G + S + P + N G LHGG A+++D + + + G + +N
Sbjct: 39 LKVDLIEPGRIVCSMKIPPHLLNAGKFLHGGATATLVDLIGSAVIYTAGASHSGVSVEIN 98
Query: 107 ISYLKPARLGDTITVESNLL-TGGASSVMEVIL 138
+SYL A L + I +ES L G A +V+ V L
Sbjct: 99 VSYLDAAFLDEEIEIESKALRVGKAVAVVSVEL 131
>At3g61200.1 68416.m06849 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 188
Score = 37.9 bits (84), Expect = 0.004
Identities = 26/105 (24%), Positives = 52/105 (49%), Gaps = 2/105 (1%)
Query: 34 TTTSAYPILRCRELKTAHLTEGCLKGSFVVDPSMCNIGDTLHGGYMASVMDAVSLYALIS 93
T+ ++ +L + + G + S V P + N LHGG +AS+ + V++ + +
Sbjct: 58 TSFDSFSVLFQNNTRALSIARGRVSCSVTVTPGISNFFKGLHGGAVASIAERVAMACVKT 117
Query: 94 -RSDGRLGWTTNMNISYLKPARLGDTITVESNLL-TGGASSVMEV 136
S+ + + +++SYL A + + VE ++ TG SV+ V
Sbjct: 118 VVSEDKHLFIGELSMSYLSSAPISSELLVEGTVVRTGRNLSVVTV 162
>At1g48320.1 68414.m05397 thioesterase family protein similar to
ComAB [Bacillus licheniformis] GI:1834379; contains Pfam
profile PF03061: thioesterase family protein
Length = 156
Score = 35.5 bits (78), Expect = 0.020
Identities = 28/107 (26%), Positives = 46/107 (42%), Gaps = 1/107 (0%)
Query: 33 ATTTSAYPILRCRELKTAHLTEGCLKGSFVVDPSMCNIGDTLHGGYMASVMDAVSLYALI 92
+ T + P L + L+ + G V P C LHGG A + ++++
Sbjct: 6 SNTKAIDPPLHMLGFEFDELSPTRITGRLPVSPVCCQPFKVLHGGVSALIAESLASMGAH 65
Query: 93 SRSDGRLGWTTNMNISYLKPARLGDTITVESN-LLTGGASSVMEVIL 138
S + ++I++LK A LGD + E+ + TG V EV L
Sbjct: 66 MASGFKRVAGIQLSINHLKSADLGDLVFAEATPVSTGKTIQVWEVKL 112
>At5g48950.1 68418.m06056 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 157
Score = 32.7 bits (71), Expect = 0.14
Identities = 26/84 (30%), Positives = 43/84 (51%), Gaps = 3/84 (3%)
Query: 57 LKGSFVVDPSMCNIGDTLHGGYMASVMDAV-SLYALISRSDGRLGWTTNMNISYLKPARL 115
+ G + C LHGG A + +A+ SL A I+ R+ +++I +L+PA L
Sbjct: 29 VSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFKRVAGI-HLSIHHLRPAAL 87
Query: 116 GDTITVESNLLTGGAS-SVMEVIL 138
G+ + ES ++ G + V EV L
Sbjct: 88 GEIVFAESFPVSVGKNIQVWEVRL 111
>At5g48950.2 68418.m06055 thioesterase family protein contains Pfam
profile PF03061: thioesterase family protein
Length = 127
Score = 32.3 bits (70), Expect = 0.19
Identities = 21/68 (30%), Positives = 35/68 (51%), Gaps = 2/68 (2%)
Query: 57 LKGSFVVDPSMCNIGDTLHGGYMASVMDAV-SLYALISRSDGRLGWTTNMNISYLKPARL 115
+ G + C LHGG A + +A+ SL A I+ R+ +++I +L+PA L
Sbjct: 29 VSGHLTLTEKCCQPFKVLHGGVSALIAEALASLGAGIASGFKRVAGI-HLSIHHLRPAAL 87
Query: 116 GDTITVES 123
G+ + ES
Sbjct: 88 GEIVFAES 95
>At1g10680.1 68414.m01214 P-glycoprotein, putative similar to
P-glycoprotein GI:4204793 from [Solanum tuberosum]
Length = 1227
Score = 31.1 bits (67), Expect = 0.43
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 6 EALTNPLNIVDKSITLLQPEPEARAWLATTTSAYPILRCRELKTAHLT 53
E+ T LN+V ++L Q P+ ++ + +AYPI + E T T
Sbjct: 303 ESFTTMLNVVIAGLSLGQAAPDISTFMRASAAAYPIFQMIERNTEDKT 350
>At3g13970.1 68416.m01764 autophagy 12b (APG12b) identical to
autophagy 12b [Arabidopsis thaliana],
gi|19912171|dbj|BAB88397
Length = 94
Score = 30.7 bits (66), Expect = 0.57
Identities = 14/42 (33%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 125 LLTGGASSVMEVILH--DGEGAPVAKSTTSFISGSDKFQKIL 164
+ T +SV ++++H GAP+ K + +SGSDKF ++
Sbjct: 1 MATESPNSVQKIVVHLRATGGAPILKQSKFKVSGSDKFANVI 42
>At4g25960.1 68417.m03735 multidrug resistance P-glycoprotein,
putative similar to multidrug resistant P-glycoprotein
GI:4204793 from [Solanum tuberosum]
Length = 1233
Score = 30.3 bits (65), Expect = 0.75
Identities = 15/48 (31%), Positives = 25/48 (52%)
Query: 6 EALTNPLNIVDKSITLLQPEPEARAWLATTTSAYPILRCRELKTAHLT 53
++ T LN+V ++L Q P+ A++ +AYPI + E T T
Sbjct: 299 KSFTTMLNVVIAGLSLGQAAPDISAFVRAKAAAYPIFKMIERNTVTKT 346
>At4g02050.1 68417.m00275 sugar transporter, putative similar to
SP|Q10710 Sugar carrier protein A {Ricinus communis},
glucose transporter [Saccharum hybrid cultivar H65-7052]
GI:347855; contains Pfam profile PF00083: major
facilitator superfamily protein
Length = 513
Score = 29.9 bits (64), Expect = 1.00
Identities = 20/54 (37%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Query: 74 LHGGYMASVMDAVSLYAL-ISRSDGRLGWTTNMNISYLKPARLGDTITVESNLL 126
L GY V+ + L+ + S G LGWT I L+ G +ITV NLL
Sbjct: 381 LSKGYSVIVVIFICLFVVAFGWSWGPLGWTIPSEIFPLETRSAGQSITVAVNLL 434
>At1g54210.1 68414.m06179 autophagy 12a (APG12a) identical to
autophagy 12a [Arabidopsis thaliana] GI:19912169
Length = 96
Score = 29.9 bits (64), Expect = 1.00
Identities = 15/36 (41%), Positives = 23/36 (63%), Gaps = 2/36 (5%)
Query: 131 SSVMEVILH--DGEGAPVAKSTTSFISGSDKFQKIL 164
SSV +V++H GAP+ K + I G+DKF K++
Sbjct: 9 SSVRKVVVHLRATGGAPILKQSKFKIPGTDKFAKVI 44
>At1g08260.1 68414.m00911 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2271
Score = 28.7 bits (61), Expect = 2.3
Identities = 12/21 (57%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Query: 42 LRCRELKTAHLTEGC-LKGSF 61
+RC ++K AHLTE C GSF
Sbjct: 2210 IRCNQVKAAHLTEQCECSGSF 2230
>At4g11655.1 68417.m01863 transmembrane protein, putative contains 4
transmembrane spanning domains, PMID:11152613
Length = 208
Score = 28.3 bits (60), Expect = 3.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Query: 78 YMASVMDAVSLYALISRSDGRLGWTTNMNISYLKPARLGDTITV 121
Y++ + D V Y L+S S + W ++N +K R ++V
Sbjct: 138 YISFIFDQVICYLLVSSSSVAIAWIQHINEDAIKTLRNNSIVSV 181
>At5g58880.1 68418.m07377 hypothetical protein
Length = 1088
Score = 27.9 bits (59), Expect = 4.0
Identities = 13/37 (35%), Positives = 23/37 (62%)
Query: 130 ASSVMEVILHDGEGAPVAKSTTSFISGSDKFQKILKD 166
AS V+ + + DG +P+ +ST IS ++ ++LKD
Sbjct: 896 ASDVLLLQVQDGNNSPLDESTDQEISKEEEKTEVLKD 932
>At2g27120.1 68415.m03259 DNA-directed DNA polymerase epsilon
catalytic subunit, putative similar to SP|Q07864 DNA
polymerase epsilon, catalytic subunit A (EC 2.7.7.7) (DNA
polymerase II subunit A) {Homo sapiens}; contains Pfam
profiles: PF03175 DNA polymerase type B, organellar and
viral, PF00136 DNA polymerase family B, PF03104 DNA
polymerase family B, exonuclease domain
Length = 2138
Score = 27.9 bits (59), Expect = 4.0
Identities = 12/20 (60%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Query: 43 RCRELKTAHLTEGC-LKGSF 61
RC ++K AHLTE C GSF
Sbjct: 2078 RCNQVKAAHLTEQCECSGSF 2097
>At1g61360.1 68414.m06915 S-locus lectin protein kinase family
protein contains protein kinase domain, Pfam:PF00069;
contains S-locus glycoprotein family domain,
Pfam:PF00954
Length = 821
Score = 27.9 bits (59), Expect = 4.0
Identities = 14/49 (28%), Positives = 27/49 (55%)
Query: 117 DTITVESNLLTGGASSVMEVILHDGEGAPVAKSTTSFISGSDKFQKILK 165
+ +V + L GG +V + L DG+ V + T+S + G+++F +K
Sbjct: 496 NNFSVLNKLGQGGFGTVYKGKLQDGKEIAVKRLTSSSVQGTEEFMNEIK 544
>At1g24650.1 68414.m03102 leucine-rich repeat family protein /
protein kinase family protein contains Pfam domains
PF00560: Leucine Rich Repeat and PF00069: Protein kinase
domain
Length = 886
Score = 27.5 bits (58), Expect = 5.3
Identities = 25/72 (34%), Positives = 35/72 (48%), Gaps = 4/72 (5%)
Query: 93 SRSDGRLGWTTNMNISYLKPARLGDTITVESNLL-TGGASSVMEVILHDGEGAPVAKSTT 151
S +D LG N+ IS ++ R E N+L GG V + LHDG V + +
Sbjct: 521 SGNDAHLGEAGNIVIS-IQVLRDATYNFDEKNILGRGGFGIVYKGELHDGTKIAVKRMES 579
Query: 152 SFISGS--DKFQ 161
S ISG D+F+
Sbjct: 580 SIISGKGLDEFK 591
>At4g38810.2 68417.m05495 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 375
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 GYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKPARLGDTITVESNLLTGGASSVMEV 136
GY+ +V+D V+ A + G + NM + LK D V+ + ++
Sbjct: 277 GYLRAVLDTVAPSATLPPI-GAVSQMDNMIMEALKMVNGDDGNVVKEEEFKKTMAEILGS 335
Query: 137 ILHDGEGAPVAKSTTSFI 154
I+ EG+P++ S+ S +
Sbjct: 336 IMLQLEGSPISVSSNSVV 353
>At4g38810.1 68417.m05494 calcium-binding EF hand family protein
contains INTERPRO:IPR002048 calcium-binding EF-hand
domain
Length = 265
Score = 27.1 bits (57), Expect = 7.0
Identities = 19/78 (24%), Positives = 36/78 (46%), Gaps = 1/78 (1%)
Query: 77 GYMASVMDAVSLYALISRSDGRLGWTTNMNISYLKPARLGDTITVESNLLTGGASSVMEV 136
GY+ +V+D V+ A + G + NM + LK D V+ + ++
Sbjct: 167 GYLRAVLDTVAPSATLPPI-GAVSQMDNMIMEALKMVNGDDGNVVKEEEFKKTMAEILGS 225
Query: 137 ILHDGEGAPVAKSTTSFI 154
I+ EG+P++ S+ S +
Sbjct: 226 IMLQLEGSPISVSSNSVV 243
Database: arabidopsis
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.317 0.133 0.387
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,165,093
Number of Sequences: 28952
Number of extensions: 159986
Number of successful extensions: 361
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 18
length of query: 175
length of database: 12,070,560
effective HSP length: 76
effective length of query: 99
effective length of database: 9,870,208
effective search space: 977150592
effective search space used: 977150592
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 56 (26.6 bits)
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