GeneModel BLAST Result against spombe

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001595-TA|BGIBMGA001595-PA|IPR003010|Nitrilase/cyanide
hydratase and apolipoprotein N-acyltransferase
         (391 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      85   2e-17
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    59   1e-09
SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual      44   4e-05
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    29   1.1  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 85.0 bits (201), Expect = 2e-17
 Identities = 69/263 (26%), Positives = 121/263 (46%), Gaps = 33/263 (12%)

Query: 113 NIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEK 172
           N+I F EL    +  C      + + AE A +GP+   +  LA KY + I+    E++EK
Sbjct: 39  NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94

Query: 173 HSDILWNTAVVISDTGNVIGKHRKNHIPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNI 232
            S+I++N+ + I++ GN+ G +RK H+     F+    + +  +  P+F T +GK+ V I
Sbjct: 95  QSNIIYNSCIYITENGNLGGVYRKVHL-----FDTERKHFKKGSDFPIFETSFGKLGVMI 149

Query: 233 CFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYM--WNVEARNAAITNCYFTAAINR 290
           C+         +   NGA+++      +A    + Y   W++  +  A  NC    A NR
Sbjct: 150 CWDTAFPEVARIHALNGADLL-----VVATNWENPYSDDWDLVTKARAFENCIPLVAANR 204

Query: 291 VGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLSRTRDGLLIAAVDLNLNR 350
           VG +E  +                F+G S   GP G     L   ++G++   VDL+  +
Sbjct: 205 VGTDEKLS----------------FFGHSKIIGPTGKVIKALDEEKEGVISYTVDLDDAK 248

Query: 351 QIKDRRCYYMTQRL-DMYVNSLS 372
            ++     +   R+ D+Y   LS
Sbjct: 249 PLRKNYYTFFEDRMPDLYKRLLS 271


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 58.8 bits (136), Expect = 1e-09
 Identities = 60/222 (27%), Positives = 95/222 (42%), Gaps = 22/222 (9%)

Query: 70  RIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNMPFAFCT 129
           R  ++G+VQ  +A   D+  N Q   +     K+++ A + G N+I   E++N P+   T
Sbjct: 42  RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--T 91

Query: 130 REKQPWCEFAESAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGN 189
                + E  E  E  P+   L  +A      +    +   E+    L+NTA+V   +G 
Sbjct: 92  GYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGSIP--ERKDGKLYNTAMVFDPSGK 147

Query: 190 VIGKHRKNH-----IPRVGDFNESNYYMEGNTGHPVFATRYGKIAVNICFGRHHVLNWMM 244
           +I  HRK H     IP    F ES+    G+    +  T YGK  + IC+        M+
Sbjct: 148 LIAVHRKIHLFDIDIPGGVSFRESDSLSPGD-AMTMVDTEYGKFGLGICYDIRFPELAMI 206

Query: 245 FGQNGAEIVFNPSATIAGEGGSEYMWNVEARNAAITNCYFTA 286
             +NG  ++  P A     G     W + AR  A+ N  F A
Sbjct: 207 AARNGCSVMIYPGAFNLSTG--PLHWELLARARAVDNEMFVA 246


>SPBC651.02 |||nitrilase |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 276

 Score = 44.0 bits (99), Expect = 4e-05
 Identities = 69/276 (25%), Positives = 105/276 (38%), Gaps = 34/276 (12%)

Query: 101 KKIIDVAGQEGVNIICFQELWNMPFAFCTREKQPWCEFAESAEDGPTTTFLRELAIKYAM 160
           K++I  A  +G   I F E  +    F         E     +       +RE A K++ 
Sbjct: 23  KELISQAAAKGAKCIFFPEASD----FIAHNSDEAIELTNHPDCSKFIRDVRESATKHS- 77

Query: 161 VIVSSILERDEKHSDILWNTAVVISDT-GNVIGKHRKNHIPRVGDFN-----ESNYYMEG 214
           + V+  +    K  + L N+++ I    G +I ++ K H+  V   N     ESN  + G
Sbjct: 78  IFVNICVHEPSKVKNKLLNSSLFIEPLHGEIISRYSKAHLFDVEIKNGPTLKESNTTLRG 137

Query: 215 NTGHPVFATRYGKIAVNICFGRHHVLNWMMFGQNGAEIVFNPSATIAGEGGSEYMWNVEA 274
               P   T  GK+   ICF        +     GA I+  PSA     G +   W V  
Sbjct: 138 EAILPPCKTPLGKVGSAICFDIRFPEQAIKLRNMGAHIITYPSAFTEKTGAAH--WEVLL 195

Query: 275 RNAAI-TNCYFTAAINRVGYEEFPNEFTSADGKPAHKDLGLFYGSSYFCGPDGVRCPGLS 333
           R  A+ + CY  A               +  GK  H +    YG S    P G      S
Sbjct: 196 RARALDSQCYVIA--------------PAQGGK--HNEKRASYGHSMIVDPWGTVIAQYS 239

Query: 334 --RTRDGLLIAAVDLNLNRQIKDRRCYYMTQRLDMY 367
              + +GL+ A +DLNL   +  R    + +R D+Y
Sbjct: 240 DISSPNGLIFADLDLNLVDHV--RTYIPLLRRNDLY 273


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 29.1 bits (62), Expect = 1.1
 Identities = 12/37 (32%), Positives = 23/37 (62%)

Query: 141  SAEDGPTTTFLRELAIKYAMVIVSSILERDEKHSDIL 177
            SAE+  + +      +   +++VS++LE DEKH D++
Sbjct: 979  SAENTTSFSIFAAQGLTDFLIVVSNLLEMDEKHVDVV 1015


  Database: spombe
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.320    0.136    0.416 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,858,207
Number of Sequences: 5004
Number of extensions: 78594
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 138
Number of HSP's gapped (non-prelim): 5
length of query: 391
length of database: 2,362,478
effective HSP length: 74
effective length of query: 317
effective length of database: 1,992,182
effective search space: 631521694
effective search space used: 631521694
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)