Silkworm BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001593-TA|BGIBMGA001593-PA|IPR009346|GRIM-19
         (153 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)               32   0.24 
SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)                     29   1.3  
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)             29   2.2  
SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   3.9  
SB_20635| Best HMM Match : rve (HMM E-Value=0.91)                      27   9.0  
SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.0  

>SB_25306| Best HMM Match : GRIM-19 (HMM E-Value=0.00062)
          Length = 100

 Score = 31.9 bits (69), Expect = 0.24
 Identities = 15/42 (35%), Positives = 25/42 (59%), Gaps = 1/42 (2%)

Query: 87  LKQLRRNRDAEAELMRDVPGWEVG-TYYGERVYKLIPPDQLV 127
           L+ L+ N + EA +M+DV GW VG + Y    +    P+Q++
Sbjct: 59  LRGLKENEELEALIMKDVKGWNVGESVYHTNKWVTPMPEQVL 100


>SB_4929| Best HMM Match : C2 (HMM E-Value=2.4e-33)
          Length = 567

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 20/70 (28%), Positives = 35/70 (50%), Gaps = 2/70 (2%)

Query: 23  PFKRIPAKSYFSGYTMF-AGFIGMTIGSIYLYNITYKRILKDEIEMRSAKMAIYPALLAE 81
           PF +I       G T      I  T+   + YN+ Y+ + ++E+  R  +++I+   +A 
Sbjct: 451 PFCKITLLPDKKGKTRHKTAIIKRTLNPSWDYNLIYEELSQEELRQRVLEISIWDHDIAS 510

Query: 82  RDREYLKQLR 91
           RD E+L  LR
Sbjct: 511 RD-EFLGGLR 519


>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
          Length = 482

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 18/40 (45%), Positives = 23/40 (57%), Gaps = 2/40 (5%)

Query: 3   EAFQVAKKQDLP-PPGGYKPIPFKRIPAKSYFSGYTMFAG 41
           E+ +VA  Q LP  PG  +P P +R+PA    SG T  AG
Sbjct: 147 ESLRVAAAQQLPVAPGPSEPQPGRRLPADDAASG-TASAG 185


>SB_40870| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 431

 Score = 27.9 bits (59), Expect = 3.9
 Identities = 29/106 (27%), Positives = 42/106 (39%), Gaps = 5/106 (4%)

Query: 26  RIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRSAKMAIYPAL---LAER 82
           R P    ++  +   GF G T+GS+ L     K I K +I      +A +P L   L E 
Sbjct: 226 RAPGSPPYTVLSFTGGFHGRTLGSLTL--TRSKAIHKVDIPSFDWPVATFPKLKYPLEEH 283

Query: 83  DREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVE 128
            RE   + +R  D    +     G          V K+I  D L+E
Sbjct: 284 QRENAAEEQRCLDEPFRIFNTWMGDPNKMILLREVLKVIRKDNLIE 329


>SB_20635| Best HMM Match : rve (HMM E-Value=0.91)
          Length = 748

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 22/81 (27%), Positives = 38/81 (46%), Gaps = 5/81 (6%)

Query: 76  PALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIP---PDQL-VEPIF 131
           P L  +RDREY  +L+++ D +A+   ++   +      E+  KL P   P++  V+ I 
Sbjct: 218 PELARDRDREYKLKLKKHADKKAK-ESEIKEGDTVLMRNEQQGKLEPNFRPEKYKVDTIL 276

Query: 132 QEYYAHSDIKEWNKRANIKLL 152
                H D   +  +  I LL
Sbjct: 277 FSLTNHGDTSSYPIKTTIALL 297


>SB_39733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2839

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 15/55 (27%), Positives = 33/55 (60%), Gaps = 4/55 (7%)

Query: 49   SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRD 103
            ++ +Y+  + +  K E E R  ++    AL   R+RE ++QLRR ++A++ ++ +
Sbjct: 2654 NLEMYSEAFSKEAK-EAERRKRELERQRAL---REREEMEQLRREQEAQSRVLHE 2704


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,196,132
Number of Sequences: 59808
Number of extensions: 198118
Number of successful extensions: 461
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 16,821,457
effective HSP length: 76
effective length of query: 77
effective length of database: 12,276,049
effective search space: 945255773
effective search space used: 945255773
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)