Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001593-TA|BGIBMGA001593-PA|IPR009346|GRIM-19
(153 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces pomb... 27 1.3
SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|... 26 2.2
SPAC167.04 |pam17||presequence translocase-associated motor subu... 25 3.8
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 25 3.8
SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5 |Schi... 25 5.1
SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase Ubp14|Sch... 25 5.1
SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein Pkl1|S... 25 5.1
SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synth... 25 5.1
SPAPJ696.02 |||actin cortical patch component Lsb4 |Schizosaccha... 25 5.1
SPBC16H5.11c |skb1|rmt5|type II protein arginine N-methyltransfe... 25 6.7
SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26 |Schizosac... 25 6.7
SPBC660.05 |||conserved fungal protein|Schizosaccharomyces pombe... 24 8.8
SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces... 24 8.8
>SPAC1F3.09 |mug161||CwfJ family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 561
Score = 27.1 bits (57), Expect = 1.3
Identities = 11/40 (27%), Positives = 26/40 (65%), Gaps = 2/40 (5%)
Query: 110 GTYYGERVYKLIPPDQLVEPIFQEYYAHSDIKEWNKRANI 149
G+Y E+ Y+ PP++ + + ++ + SD+++ +KR +I
Sbjct: 122 GSYNEEKYYQ--PPEKFEQSLNEKCFHRSDVQKLSKRCDI 159
>SPBC8D2.06 |||isoleucine-tRNA ligase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 1064
Score = 26.2 bits (55), Expect = 2.2
Identities = 17/56 (30%), Positives = 26/56 (46%)
Query: 49 SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDV 104
+IY + Y I K+EI +RS +P +E D E + + + EL R V
Sbjct: 775 NIYQHLRNYMPIDKNEISLRSVHFLPFPTYKSELDDETVLRRVKRMQTIIELARYV 830
>SPAC167.04 |pam17||presequence translocase-associated motor subunit
Pam17 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 197
Score = 25.4 bits (53), Expect = 3.8
Identities = 13/42 (30%), Positives = 22/42 (52%), Gaps = 3/42 (7%)
Query: 79 LAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKL 120
+A R++E+ + L +NR P + YYGE++Y L
Sbjct: 135 IAAREQEFYRHLVKNRVTPQMESYSNP---IPDYYGEKIYSL 173
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 3.8
Identities = 11/40 (27%), Positives = 20/40 (50%)
Query: 11 QDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSI 50
Q +PPP G + P + + S+++ Y G + + G I
Sbjct: 231 QKIPPPKGSENAPLRCLLIDSWYNSYQGVIGLVRIMEGFI 270
>SPAC1142.05 |ctr5||copper transporter complex subunit Ctr5
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 173
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 33 FSGYTMFAGFIGMTIGSIYLYNITY 57
F+GY + GF+G IG + TY
Sbjct: 136 FNGYAILFGFVGAWIGFFLFASDTY 160
>SPBC6B1.06c |ubp14|ucp2|ubiquitin C-terminal hydrolase
Ubp14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/45 (26%), Positives = 24/45 (53%)
Query: 88 KQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVEPIFQ 132
K++R + + L VP ++G GE++Y+ + DQ ++ Q
Sbjct: 448 KRVRYSSFSSQGLTLTVPRVKIGEIEGEQIYEEVSIDQCLDATIQ 492
>SPAC3A11.14c |pkl1|klp1, SPAC3H5.03c|kinesin-like protein
Pkl1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 832
Score = 25.0 bits (52), Expect = 5.1
Identities = 12/40 (30%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Query: 65 IEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDV 104
+ +RS + + + AE+D EY QL+ R+A + +D+
Sbjct: 178 LNLRS-HLQVQEQVYAEKDHEYSLQLQSYREAAEKAKQDI 216
>SPAC6F12.10c |ade3|min11|phosphoribosylformylglycinamidine synthase
Ade3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1323
Score = 25.0 bits (52), Expect = 5.1
Identities = 10/29 (34%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Query: 116 RVYKLIP-PDQLVEPIFQEYYAHSDIKEW 143
R ++P P+++V + YY HS EW
Sbjct: 1277 RFLAMMPHPERVVLKVANSYYPHSKASEW 1305
>SPAPJ696.02 |||actin cortical patch component Lsb4
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 25.0 bits (52), Expect = 5.1
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 7/57 (12%)
Query: 49 SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVP 105
S+Y +IT KR+L ++ +A +Y L + K NR E ++ DVP
Sbjct: 182 SLYRGDITAKRLLSGQVAQPAAADPLYRVLNS-------KIFNLNRGDEGDIYNDVP 231
>SPBC16H5.11c |skb1|rmt5|type II protein arginine
N-methyltransferase Skb1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 645
Score = 24.6 bits (51), Expect = 6.7
Identities = 13/42 (30%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
Query: 49 SIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQL 90
S L NITY+ +D ++ + AI+ AL+ +RD + ++
Sbjct: 308 SYNLENITYEIFERDPVKYAQYEQAIFSALM-DRDESSVTRI 348
>SPCC1620.10 |cwf26||complexed with Cdc5 protein Cwf26
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 305
Score = 24.6 bits (51), Expect = 6.7
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 1/49 (2%)
Query: 58 KRILKD-EIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVP 105
KR LK+ E E R K + + +EYLK+L R + D P
Sbjct: 175 KRKLKEKEEEARRQKEQQQGVVQVRQQKEYLKELERQKTVPLARYEDDP 223
>SPBC660.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 143
Score = 24.2 bits (50), Expect = 8.8
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 13 LPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSI 50
+PPP G + +++ +S +M AG G +G++
Sbjct: 48 IPPPPGTTTVVYQKDVPRSSDGSRSMTAGLGGFMVGAL 85
>SPCC645.05c |myo2|rng5|myosin II heavy chain|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1526
Score = 24.2 bits (50), Expect = 8.8
Identities = 14/61 (22%), Positives = 27/61 (44%)
Query: 44 GMTIGSIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRD 103
G ++ + L + + LKD+I AKM +R++E K++ + + D
Sbjct: 1449 GQSLQHVNLAHAIELKALKDQINSEKAKMFSVQVQYEKREQELQKRIASLEKVNKDSLID 1508
Query: 104 V 104
V
Sbjct: 1509 V 1509
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.321 0.139 0.418
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 717,891
Number of Sequences: 5004
Number of extensions: 28095
Number of successful extensions: 80
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 71
Number of HSP's gapped (non-prelim): 13
length of query: 153
length of database: 2,362,478
effective HSP length: 67
effective length of query: 86
effective length of database: 2,027,210
effective search space: 174340060
effective search space used: 174340060
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 50 (24.2 bits)
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