GeneModel BLAST Result against rice

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001593-TA|BGIBMGA001593-PA|IPR009346|GRIM-19
         (153 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0654 - 4791998-4792085,4792250-4792674                           31   0.41 
11_01_0137 - 1137979-1138257,1138419-1138970,1139052-1139409,113...    28   2.9  
08_02_1084 - 24232968-24234779                                         28   3.8  
07_03_0997 - 23203166-23203330,23203627-23203693,23203771-232038...    28   3.8  
03_05_0816 + 27928812-27930059,27931007-27931111,27931197-279312...    27   6.6  
03_01_0435 + 3366274-3366300,3366709-3366888,3367006-3367044           27   6.6  
08_02_1485 - 27466761-27467753                                         27   8.7  

>03_01_0654 - 4791998-4792085,4792250-4792674
          Length = 170

 Score = 31.1 bits (67), Expect = 0.41
 Identities = 14/31 (45%), Positives = 19/31 (61%), Gaps = 1/31 (3%)

Query: 1   MAEAFQVAKKQDLPPPGGYKPIPF-KRIPAK 30
           MA    +   QD PPPGG+ P+ + +RIP K
Sbjct: 82  MASVKDMPVLQDGPPPGGFAPVRYARRIPTK 112


>11_01_0137 -
           1137979-1138257,1138419-1138970,1139052-1139409,
           1139577-1139869,1140623-1140675,1140785-1140941,
           1141666-1141683,1141846-1141929,1142005-1142064,
           1142182-1142222,1142316-1142451
          Length = 676

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 17/80 (21%), Positives = 43/80 (53%), Gaps = 7/80 (8%)

Query: 48  GSIYLYNITYKRILKDEIEMRSAKM-----AIYPALLAERDRE-YLKQLRRNRDAEAELM 101
           GS  L+++ YK ++KD I  R         A YP++   +++E + ++L++N      ++
Sbjct: 210 GSYCLWSVEYKEVMKDFIVKRLKDQLFMARAHYPSIAKLKNQETFTRELKQNIQEHERML 269

Query: 102 RD-VPGWEVGTYYGERVYKL 120
            D +   ++  ++ +++ K+
Sbjct: 270 SDTIADADLPPFFAKKLEKM 289


>08_02_1084 - 24232968-24234779
          Length = 603

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/23 (52%), Positives = 16/23 (69%)

Query: 81  ERDREYLKQLRRNRDAEAELMRD 103
           ERDR+Y ++  R+RD E E  RD
Sbjct: 515 ERDRDYDRERERDRDRERERDRD 537


>07_03_0997 -
           23203166-23203330,23203627-23203693,23203771-23203862,
           23204820-23204956,23205050-23205116,23205212-23205278,
           23205356-23205441,23206061-23206153,23206337-23206522,
           23207316-23207372,23207455-23207582,23207662-23207731,
           23207815-23207950,23208378-23208529,23208606-23208680,
           23208765-23208929,23209063-23209128,23209229-23209333,
           23209929-23210132,23210462-23211715
          Length = 1123

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 67  MRSAKMAIYPALLAERDREYLKQL 90
           +RSAK+A+   L   RD  Y+KQL
Sbjct: 748 LRSAKLAVEKGLAQGRDESYVKQL 771


>03_05_0816 +
           27928812-27930059,27931007-27931111,27931197-27931262,
           27931337-27931501,27931671-27931745,27931829-27931983,
           27932234-27932369,27932454-27932523,27932602-27932729,
           27932838-27932894,27933326-27933511,27934031-27934123,
           27934488-27934573,27934668-27934734,27934873-27934939,
           27935016-27935152,27935618-27935709,27935849-27935915,
           27936058-27936078
          Length = 1006

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/24 (54%), Positives = 16/24 (66%)

Query: 67  MRSAKMAIYPALLAERDREYLKQL 90
           +RSAK+AI  +    RD  YLKQL
Sbjct: 679 LRSAKLAIEKSQSQGRDESYLKQL 702


>03_01_0435 + 3366274-3366300,3366709-3366888,3367006-3367044
          Length = 81

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 121 IPPDQLVEPIFQEYYAHSDIKEWNKRANIK 150
           I PDQ +  I Q YY ++  +E+N R  ++
Sbjct: 10  ISPDQQIPFIVQAYYTNTAKREYNYRPTVR 39


>08_02_1485 - 27466761-27467753
          Length = 330

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)

Query: 13  LPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLY 53
           LP P    P P  ++P   YF G     GF+  + GS++ +
Sbjct: 65  LPNPASPPPPPTSKLPVILYFHG----GGFVLFSTGSVFYH 101


  Database: rice
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,624,783
Number of Sequences: 37544
Number of extensions: 177655
Number of successful extensions: 459
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 451
Number of HSP's gapped (non-prelim): 10
length of query: 153
length of database: 14,793,348
effective HSP length: 76
effective length of query: 77
effective length of database: 11,940,004
effective search space: 919380308
effective search space used: 919380308
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)