GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001593-TA|BGIBMGA001593-PA|IPR009346|GRIM-19
         (153 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical ...    96   1e-20
Z68299-4|CAD60422.2|  367|Caenorhabditis elegans Hypothetical pr...    29   1.5  
Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical pr...    28   2.6  
AF039047-9|AAB94229.2|  400|Caenorhabditis elegans Hypothetical ...    27   4.5  
Z75554-10|CAA99956.1|  535|Caenorhabditis elegans Hypothetical p...    27   7.8  

>AF043693-7|AAB97540.1|  171|Caenorhabditis elegans Hypothetical
           protein C34B2.8 protein.
          Length = 171

 Score = 95.9 bits (228), Expect = 1e-20
 Identities = 51/129 (39%), Positives = 72/129 (55%), Gaps = 1/129 (0%)

Query: 10  KQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYKRILKDEIEMRS 69
           +QD+PP GGY+   F R   K  +S  T+ A   G T   +Y      K+ + ++ E   
Sbjct: 8   RQDMPPKGGYRAFNFHRTFPKLVWSPGTVVAAIFGATAYGVYAALEGKKKDITEKFEDVD 67

Query: 70  AKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYKLIPPDQLVEP 129
              A+ P L AERDR +LK L +NR  E E+M+DVPGW+ GT+YGE VY  +  D+  +P
Sbjct: 68  INNAMEPFLTAERDRYWLKLLAKNRALEEEIMKDVPGWKTGTWYGEPVYFTL-GDKWWDP 126

Query: 130 IFQEYYAHS 138
              E + HS
Sbjct: 127 TATEVFVHS 135


>Z68299-4|CAD60422.2|  367|Caenorhabditis elegans Hypothetical
           protein T04B2.7 protein.
          Length = 367

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 13/36 (36%), Positives = 21/36 (58%)

Query: 65  IEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAEL 100
           ++ + AK+ I   L+A +D  Y+  L+ NRD E  L
Sbjct: 309 VDEKKAKLPIMALLMARKDLLYVSWLKPNRDVENTL 344


>Z30215-6|CAF31477.2| 1144|Caenorhabditis elegans Hypothetical
           protein F40F12.5 protein.
          Length = 1144

 Score = 28.7 bits (61), Expect = 1.9
 Identities = 21/72 (29%), Positives = 35/72 (48%), Gaps = 7/72 (9%)

Query: 79  LAERDREYLKQLRRNRDAE----AELMRDVPGWEVGTYYG---ERVYKLIPPDQLVEPIF 131
           +++  R+   +L RNR++     A L R V G    + YG   E     IPP  +V  + 
Sbjct: 97  VSDYSRDRTTKLDRNRNSPELIVALLQRKVQGIRFSSNYGREEEPCVIEIPPGTMVREMA 156

Query: 132 QEYYAHSDIKEW 143
            + +  S++KEW
Sbjct: 157 DDDWKMSELKEW 168


>Z83239-2|CAB05802.1|  182|Caenorhabditis elegans Hypothetical
          protein T09F5.2 protein.
          Length = 182

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 15/47 (31%), Positives = 26/47 (55%), Gaps = 3/47 (6%)

Query: 31 SYFSGYTMFAGFIGMTIGSIYLYNITYKR---ILKDEIEMRSAKMAI 74
          S+F G+T+ A F+ +  G  ++Y   Y R   I+  E+E  S K ++
Sbjct: 32 SFFIGFTVSAVFVLIAFGVSFIYFAQYDRTVKIIPKELEKSSRKSSL 78


>AF039047-9|AAB94229.2|  400|Caenorhabditis elegans Hypothetical
           protein K11D12.9 protein.
          Length = 400

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 14/56 (25%), Positives = 26/56 (46%)

Query: 47  IGSIYLYNITYKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMR 102
           +  + + N   ++ + D+ E+   +  IY    A +D E L   ++  D E EL R
Sbjct: 191 LDKLTIQNYRQQQEIHDQKELSEHRKKIYSEEKARKDEEILNLQKQKTDVEMELER 246


>Z75554-10|CAA99956.1|  535|Caenorhabditis elegans Hypothetical
           protein ZC455.5a protein.
          Length = 535

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 16/40 (40%), Positives = 22/40 (55%), Gaps = 1/40 (2%)

Query: 69  SAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWE 108
           +AK AI   L+AE+  +  K L R+  AE     D+P WE
Sbjct: 393 AAKPAIVIPLIAEQP-DNGKMLARHGSAEIYSKHDIPHWE 431


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,875,106
Number of Sequences: 27539
Number of extensions: 151387
Number of successful extensions: 382
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 378
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 12,573,161
effective HSP length: 75
effective length of query: 78
effective length of database: 10,507,736
effective search space: 819603408
effective search space used: 819603408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 56 (26.6 bits)