GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001593-TA|BGIBMGA001593-PA|IPR009346|GRIM-19
         (153 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP synth...    21   4.2  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    21   7.3  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   7.3  
AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    20   9.7  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    20   9.7  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    20   9.7  

>AY343324-1|AAQ21381.1|  156|Apis mellifera vacuolar H+ ATP
          synthase 16 kDa proteolipidsubunit protein.
          Length = 156

 Score = 21.4 bits (43), Expect = 4.2
 Identities = 7/14 (50%), Positives = 10/14 (71%)

Query: 35 GYTMFAGFIGMTIG 48
          GYT+F GF+ +  G
Sbjct: 84 GYTLFKGFVHLGAG 97


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 7/26 (26%), Positives = 13/26 (50%)

Query: 50  IYLYNITYKRILKDEIEMRSAKMAIY 75
           IY +N+   + +KDE   +   +  Y
Sbjct: 534 IYGFNVNATKQIKDEANKKGVSLRFY 559


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/18 (33%), Positives = 11/18 (61%)

Query: 5   FQVAKKQDLPPPGGYKPI 22
           F +  ++  PPP  +KP+
Sbjct: 407 FLIGSRRTSPPPEDWKPL 424


>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 27  IPAKSYFSGYTMFAGFIG 44
           +PAK Y     +F+G +G
Sbjct: 402 VPAKKYDCVTLLFSGIVG 419


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/8 (87%), Positives = 7/8 (87%)

Query: 102 RDVPGWEV 109
           RDVP WEV
Sbjct: 123 RDVPTWEV 130


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 20.2 bits (40), Expect = 9.7
 Identities = 7/18 (38%), Positives = 11/18 (61%)

Query: 27  IPAKSYFSGYTMFAGFIG 44
           +PAK Y     +F+G +G
Sbjct: 402 VPAKKYDCVTLLFSGIVG 419


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 49,591
Number of Sequences: 429
Number of extensions: 2381
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of query: 153
length of database: 140,377
effective HSP length: 53
effective length of query: 100
effective length of database: 117,640
effective search space: 11764000
effective search space used: 11764000
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.4 bits)
S2: 40 (20.2 bits)