GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001593-TA|BGIBMGA001593-PA|IPR009346|GRIM-19
         (153 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g04630.1 68414.m00458 expressed protein                             65   2e-11
At2g33220.1 68415.m04070 expressed protein                             64   3e-11
At4g38840.1 68417.m05499 auxin-responsive protein, putative auxi...    28   3.2  
At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family p...    27   5.6  
At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family p...    27   5.6  
At5g20580.2 68418.m02444 expressed protein predicted protein, Ar...    27   7.3  
At5g20580.1 68418.m02443 expressed protein predicted protein, Ar...    27   7.3  
At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing p...    27   7.3  
At5g19150.2 68418.m02280 carbohydrate kinase family contains Pfa...    27   7.3  
At5g19150.1 68418.m02279 carbohydrate kinase family contains Pfa...    27   7.3  
At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containi...    27   7.3  
At5g53440.1 68418.m06641 expressed protein                             26   9.7  
At1g38380.1 68414.m04694 hypothetical protein                          26   9.7  

>At1g04630.1 68414.m00458 expressed protein
          Length = 143

 Score = 65.3 bits (152), Expect = 2e-11
 Identities = 38/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)

Query: 1   MAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYK-- 58
           MA    +   QD PPPGG+ P+ + R  + +  S   MF    G     +Y      K  
Sbjct: 12  MASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAMFLAVSGAFAWGMYQVGQGNKIR 71

Query: 59  RILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVG 110
           R LK+E    +A+  I P L AE D  ++ + ++  + EA++M+DVPGW+VG
Sbjct: 72  RALKEE--KYAARRTILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKVG 121


>At2g33220.1 68415.m04070 expressed protein
          Length = 143

 Score = 64.5 bits (150), Expect = 3e-11
 Identities = 38/112 (33%), Positives = 59/112 (52%), Gaps = 4/112 (3%)

Query: 1   MAEAFQVAKKQDLPPPGGYKPIPFKRIPAKSYFSGYTMFAGFIGMTIGSIYLYNITYK-- 58
           MA    +   QD PPPGG+ P+ + R  + +  S   +F    G     +Y      K  
Sbjct: 12  MASVKDMPLLQDGPPPGGFAPVRYARRISNTGPSAMAIFLTVSGAFAWGMYQVGQGNKIR 71

Query: 59  RILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVG 110
           R LK+E    +A+ AI P L AE D  ++ + ++  + EA++M+DVPGW+VG
Sbjct: 72  RALKEE--KYAARRAILPILQAEEDERFVSEWKKYLEYEADVMKDVPGWKVG 121


>At4g38840.1 68417.m05499 auxin-responsive protein, putative
           auxin-inducible SAUR gene, Raphanus sativus,AB000708
          Length = 99

 Score = 27.9 bits (59), Expect = 3.2
 Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)

Query: 72  MAIYPALLAERDREYLKQLRRNRDAEAELMRDVPGWEVGTYYGERVYK--LIPPDQLVEP 129
           MAI    + +  ++ L+Q +    + +    DVP   +  Y GE+  K  ++P   L +P
Sbjct: 1   MAIRIPRVLQSSKQILRQAKLLSSSSSSSSLDVPKGYLAVYVGEQNMKRFVVPVSYLDQP 60

Query: 130 IFQE 133
            FQ+
Sbjct: 61  SFQD 64


>At5g37370.2 68418.m04490 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 385

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 57  YKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRD 103
           Y R   DE++ RS + +      ++RD +  ++  R +D E E  RD
Sbjct: 224 YDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRD 270


>At5g37370.1 68418.m04489 pre-mRNA splicing factor PRP38 family
           protein (SRL1) contains Pfam profile PF03371: PRP38
           family
          Length = 393

 Score = 27.1 bits (57), Expect = 5.6
 Identities = 14/47 (29%), Positives = 24/47 (51%)

Query: 57  YKRILKDEIEMRSAKMAIYPALLAERDREYLKQLRRNRDAEAELMRD 103
           Y R   DE++ RS + +      ++RD +  ++  R +D E E  RD
Sbjct: 232 YDRNGGDEVQQRSPRRSQSRDYYSDRDSDRQREREREKDRERERGRD 278


>At5g20580.2 68418.m02444 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 59  RILKDEIEMRSAKMAIYPALLAERDRE--YLKQLRRNRDAEAELMRDVPG-WEVGTYYGE 115
           R L  E++   +++ +  +L++ERDRE  +++       AE E +R + G W +     E
Sbjct: 262 RTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQYVAENERLRAILGEWSMRAAKLE 321

Query: 116 RVYKL 120
           R  ++
Sbjct: 322 RALEV 326


>At5g20580.1 68418.m02443 expressed protein predicted protein,
           Arabidopsis thaliana
          Length = 348

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 17/65 (26%), Positives = 34/65 (52%), Gaps = 3/65 (4%)

Query: 59  RILKDEIEMRSAKMAIYPALLAERDRE--YLKQLRRNRDAEAELMRDVPG-WEVGTYYGE 115
           R L  E++   +++ +  +L++ERDRE  +++       AE E +R + G W +     E
Sbjct: 262 RTLSAEVDQLHSELNLARSLISERDREIQHVRNTNNQYVAENERLRAILGEWSMRAAKLE 321

Query: 116 RVYKL 120
           R  ++
Sbjct: 322 RALEV 326


>At5g19820.1 68418.m02355 PBS lyase HEAT-like repeat-containing
           protein contains Pfam profile: PF03130 PBS lyase
           HEAT-like repeat
          Length = 1116

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/24 (58%), Positives = 15/24 (62%)

Query: 67  MRSAKMAIYPALLAERDREYLKQL 90
           MRSAK+AI       RD  YLKQL
Sbjct: 742 MRSAKLAIEKGESQGRDLSYLKQL 765


>At5g19150.2 68418.m02280 carbohydrate kinase family contains Pfam
           profile PF01256: Carbohydrate kinase
          Length = 365

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 117 VYKLIPPDQLVEPIFQEYYAHSDIKEWNKR 146
           V K   P+ +V P+ +E Y+ S + E +KR
Sbjct: 115 VIKSYSPELIVHPVLEESYSISQLSEEDKR 144


>At5g19150.1 68418.m02279 carbohydrate kinase family contains Pfam
           profile PF01256: Carbohydrate kinase
          Length = 365

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 11/30 (36%), Positives = 18/30 (60%)

Query: 117 VYKLIPPDQLVEPIFQEYYAHSDIKEWNKR 146
           V K   P+ +V P+ +E Y+ S + E +KR
Sbjct: 115 VIKSYSPELIVHPVLEESYSISQLSEEDKR 144


>At3g24000.1 68416.m03014 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 633

 Score = 26.6 bits (56), Expect = 7.3
 Identities = 14/43 (32%), Positives = 19/43 (44%), Gaps = 2/43 (4%)

Query: 108 EVGTYYGERVYKLIPPDQLVEPIFQEYYAHSDIKEWNKRANIK 150
           E+G Y  E V++L P D     I    YA      WN  A ++
Sbjct: 447 ELGAYAAEHVFELDPDDPGPHVILYNIYASGG--RWNDAARVR 487


>At5g53440.1 68418.m06641 expressed protein
          Length = 1181

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 12/33 (36%), Positives = 19/33 (57%)

Query: 81  ERDREYLKQLRRNRDAEAELMRDVPGWEVGTYY 113
           +RDR+Y +   R+RD + E  RD   +E   Y+
Sbjct: 325 DRDRDYERDRDRDRDRDRERDRDRRDYEHDRYH 357


>At1g38380.1 68414.m04694 hypothetical protein
          Length = 378

 Score = 26.2 bits (55), Expect = 9.7
 Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 2/55 (3%)

Query: 97  EAELMRDVPGWEVGTYYGERVYKL-IPPDQLVEP-IFQEYYAHSDIKEWNKRANI 149
           E E +    G  VG+      Y+L  PP   +EP +FQ+Y   S    WN  A +
Sbjct: 322 EDEFIDPAEGLRVGSSSSALPYQLPSPPPIPMEPHVFQQYVVDSFKSVWNAIATL 376


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.321    0.139    0.418 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,722,012
Number of Sequences: 28952
Number of extensions: 147054
Number of successful extensions: 404
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 392
Number of HSP's gapped (non-prelim): 15
length of query: 153
length of database: 12,070,560
effective HSP length: 75
effective length of query: 78
effective length of database: 9,899,160
effective search space: 772134480
effective search space used: 772134480
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.8 bits)
S2: 55 (26.2 bits)