Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001592-TA|BGIBMGA001592-PA|IPR002699|ATPase, V1/A1
complex, subunit D
(285 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces p... 120 2e-28
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 32 0.082
SPCC584.14 |mug160||conserved eukaryotic protein|Schizosaccharom... 29 1.0
SPAC29B12.02c |set2||histone lysine methyltransferase Set2 |Schi... 28 1.8
SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A related|Schizosa... 27 2.3
SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase Cdc2|Sch... 27 3.1
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces... 27 4.1
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 27 4.1
SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|ch... 26 5.4
SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr ... 26 7.1
SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta 5-->4-i... 25 9.4
>SPCC965.03 |vma8||V-type ATPase subunit D |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 285
Score = 120 bits (289), Expect = 2e-28
Identities = 76/286 (26%), Positives = 142/286 (49%), Gaps = 2/286 (0%)
Query: 1 MNIENRYQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSH 60
M + R V + L +K R + G+ LLKRK+E L+ + R++ + +
Sbjct: 1 MASKQRENVFPTRMTLTTMKTRLKGAQTGHSLLKRKSEALKKRFREIVVNIEQAKQKMGR 60
Query: 61 KMKEAYMSLAAIKFTNGES-NALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTN 119
M+ A S+A + F G + N + ++V+Q ++RV+ EN+SGV E + + +
Sbjct: 61 VMQIAAFSMAEVGFAMGNNINFEIQQSVKQPRLRVRSKQENISGVFLPTFEMNLDESIDD 120
Query: 120 ALQYAGLGAGGHRTSEAKKSFREAVHLVLKLASLRKTCVLLDEAIRIAWRKVNGIEKVIM 179
Q GLG GG + +A++ + +AV +++LAS + VLL + +++ R+VN IE +I+
Sbjct: 121 -FQLTGLGKGGQQIQKARQVYEKAVETLVQLASYQSAFVLLGDVLQMTNRRVNSIEHIII 179
Query: 180 PKLRNTEHYILVEIDECEREEFHRXXXXXXXXXXXXXXXXHKPINRQGGDHSVLDSKPLV 239
P+L NT YI E++E ERE+F R QGG +++ +K +
Sbjct: 180 PRLENTIKYIESELEELEREDFTRLKKVQKTKENAEKADSVTKEEHQGGSNTLQQTKDVG 239
Query: 240 LSYEKSSDVLMSVLHPCQSLTSSSVSFGDCKPICYPHNWDDDDLLF 285
+ +++V V++ ++ + S N D++++F
Sbjct: 240 GAIAPAAEVGKEVINEVENSKDDTYSLPSTSTDDEEENDSDEEVIF 285
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 32.3 bits (70), Expect = 0.082
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Query: 31 ELLKRKAEGLRIKGRQVASELIATHGLLSH---KMKEAYMSLAAIKFTNGESNALVLENV 87
ELL K+ + G + +L+ + LLSH K+ E L + N E A E +
Sbjct: 390 ELLNLKSNNSSVDGVKTRRQLLEENALLSHKVLKLTEEIQDLETLNQLNTEIEARQSEKL 449
Query: 88 EQAQIRVQRITE 99
+ Q QR+++
Sbjct: 450 NEVQEETQRLSQ 461
>SPCC584.14 |mug160||conserved eukaryotic
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 28.7 bits (61), Expect = 1.0
Identities = 15/48 (31%), Positives = 26/48 (54%)
Query: 78 ESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAG 125
E + L + Q I Q+I ++ +TTT+ +A+EE G T+ + G
Sbjct: 371 EISVLCTRLLLQNNIENQKIIGGLTPITTTHSDALEEAGFTSYINDKG 418
>SPAC29B12.02c |set2||histone lysine methyltransferase Set2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 798
Score = 27.9 bits (59), Expect = 1.8
Identities = 22/82 (26%), Positives = 40/82 (48%), Gaps = 2/82 (2%)
Query: 20 KRRQEHVDRGYE-LLKRKAEGLRIKGRQVASELIATHGLLSHKMKE-AYMSLAAIKFTNG 77
++R+E YE LKR A+ L K + + + H L SH + A+ ++ A F N
Sbjct: 651 QKREEKRRLAYEESLKRHAKKLHEKKTKSSQDATIDHHLTSHSPESIAFKAVLAKFFANK 710
Query: 78 ESNALVLENVEQAQIRVQRITE 99
+ + ++RV+++TE
Sbjct: 711 TARYQEKLGKAEFKLRVKKMTE 732
>SPAC1F5.10 |||ATP-dependent RNA helicase, eIF4A
related|Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 27.5 bits (58), Expect = 2.3
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 4/65 (6%)
Query: 34 KRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTNGESNALVLENVEQAQIR 93
+RK + L K R+ + + HG + K ++A M F G S L+ ++ I
Sbjct: 270 RRKVDWLTEKMREANFTVTSMHGEMPQKERDAIMQ----DFRQGNSRVLICTDIWARGID 325
Query: 94 VQRIT 98
VQ+++
Sbjct: 326 VQQVS 330
>SPBC11B10.09 |cdc2|swo2|cyclin-dependent protein kinase
Cdc2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 27.1 bits (57), Expect = 3.1
Identities = 20/83 (24%), Positives = 41/83 (49%), Gaps = 5/83 (6%)
Query: 41 RIKGRQVASELIA----THGLLSHKMKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQR 96
++ GR VA + I + G+ S ++E + L + N SN + L ++ A+ ++
Sbjct: 24 KLSGRIVAMKKIRLEDESEGVPSTAIREISL-LKEVNDENNRSNCVRLLDILHAESKLYL 82
Query: 97 ITENVSGVTTTYLEAVEETGVTN 119
+ E + Y++ + ETG T+
Sbjct: 83 VFEFLDMDLKKYMDRISETGATS 105
>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3131
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/87 (20%), Positives = 42/87 (48%), Gaps = 1/87 (1%)
Query: 29 GYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTNGESNALVLENVE 88
G EL++ + E L +K + + ++A + K+++ + L + K+ N A + +
Sbjct: 3010 GEELMRERFEHL-LKAYEKMALMVAEQEEFNAKIEDMALKLLSEKYDNEAYQAELFYRLS 3068
Query: 89 QAQIRVQRITENVSGVTTTYLEAVEET 115
+V +++ + T Y E +E+T
Sbjct: 3069 NCVEKVLHNKISITDLKTEYEEILEQT 3095
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 26.6 bits (56), Expect = 4.1
Identities = 18/67 (26%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Query: 77 GESNALVLENVEQAQIRVQRIT--ENVSGVTTTYLEAVEETGVTNALQYAGLGAGGHRTS 134
G+ N ++ E+ + Q V+R+ + + + YL ++ TGVT Y +GAG +
Sbjct: 323 GKKNPVLREDQPEYQRAVRRMQRKKEIDLMDEDYLPSLL-TGVTKDRMYVQIGAGRKNPN 381
Query: 135 EAKKSFR 141
E ++ R
Sbjct: 382 EVRRKKR 388
>SPCC18.04 |pof6||F-box protein Pof6|Schizosaccharomyces pombe|chr
3|||Manual
Length = 872
Score = 26.2 bits (55), Expect = 5.4
Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Query: 220 HKPINRQGGDHSVLDSKPLVLSYEKSSDVLMSVLHPCQ-SLTSSSVSFGDCKP 271
H P +VLDSK +S S ++ + ++H C+ SL + V G P
Sbjct: 522 HLPTTELAAQAAVLDSKLEGISTMFSLELALKIVHLCKVSLARAKVFMGTSVP 574
>SPBC365.11 |||GRIP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 266
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/70 (21%), Positives = 34/70 (48%)
Query: 18 EIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTNG 77
+IK+R E D LK + E L+ R V +EL+ + + +++ + ++K
Sbjct: 127 DIKKRLEKSDETVCKLKEENENLQDMLRNVGNELVESRDEIKELIEKQKVQKESVKSHES 186
Query: 78 ESNALVLENV 87
E ++++ +
Sbjct: 187 ELSSVMSSEI 196
>SPBC3F6.02c |||3 beta-hydroxysteroid dehydrogenase/delta
5-->4-isomerase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 340
Score = 25.4 bits (53), Expect = 9.4
Identities = 21/67 (31%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 66 YMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAG 125
Y S A + F NG V E+ ++ + E+ + LEA E+ T AL+ AG
Sbjct: 114 YTSSAGVVF-NGADLINVDESQPIPEVHMDAYNESKALAEKQVLEASSESLKTAALRVAG 172
Query: 126 LGAGGHR 132
L G R
Sbjct: 173 LFGPGDR 179
Database: spombe
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,132,926
Number of Sequences: 5004
Number of extensions: 40119
Number of successful extensions: 114
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 109
Number of HSP's gapped (non-prelim): 11
length of query: 285
length of database: 2,362,478
effective HSP length: 72
effective length of query: 213
effective length of database: 2,002,190
effective search space: 426466470
effective search space used: 426466470
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 53 (25.4 bits)
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