Last updated: 2022/11/18
BLASTP 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BGIBMGA001592-TA|BGIBMGA001592-PA|IPR002699|ATPase, V1/A1
complex, subunit D
(285 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_1340 + 32766773-32767582 118 4e-27
07_03_1305 - 25638531-25638584,25638909-25638990,25639087-256391... 34 0.11
12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771 29 3.2
03_05_0364 + 23495069-23495483,23496056-23496136,23496381-234964... 29 4.3
01_05_0471 + 22535477-22535609,22535714-22535808,22535929-225360... 29 4.3
02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816 29 5.6
11_04_0470 - 18092681-18092695,18092725-18092811,18093528-180935... 28 7.5
07_01_0907 - 7636725-7637681 28 7.5
06_01_0741 - 5510159-5510581,5510862-5511124,5511223-5511400,551... 28 9.9
03_06_0582 - 34891613-34891795,34892407-34892466,34893134-348932... 28 9.9
>04_04_1340 + 32766773-32767582
Length = 269
Score = 118 bits (285), Expect = 4e-27
Identities = 70/205 (34%), Positives = 118/205 (57%), Gaps = 7/205 (3%)
Query: 6 RYQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEA 65
R V ++ ML +K R RG+ LLK+K++ L ++ R + +++A + M+ +
Sbjct: 7 RLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRAILKKIVAAKESMGEAMRAS 66
Query: 66 YMSLAAIKFTNGES-NALVLENVEQAQIRVQRITENVSGVT----TTYLE-AVEETGVTN 119
SLA K+ G+ +VL++V A +RV+ ENV+GV T +++ A G +N
Sbjct: 67 SFSLAEAKYVAGDGVRHVVLQSVRSASLRVRSHQENVAGVKLPKFTHFVDPAAGSAGPSN 126
Query: 120 AL-QYAGLGAGGHRTSEAKKSFREAVHLVLKLASLRKTCVLLDEAIRIAWRKVNGIEKVI 178
A GL GG + + + + +A+ ++++LASL+ + + LDEAI+ R+VN +E V+
Sbjct: 127 ASPSLTGLARGGQQVAACRAAHVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVV 186
Query: 179 MPKLRNTEHYILVEIDECEREEFHR 203
P+L NT YI E+DE ERE+F R
Sbjct: 187 KPRLENTISYIKGELDELEREDFFR 211
>07_03_1305 -
25638531-25638584,25638909-25638990,25639087-25639169,
25639252-25639515,25639984-25640060,25640183-25640277,
25640953-25641065
Length = 255
Score = 34.3 bits (75), Expect = 0.11
Identities = 16/35 (45%), Positives = 24/35 (68%), Gaps = 1/35 (2%)
Query: 223 INRQGGDHSVLDSKPLVLSYEKSSDVLMSVLHPCQ 257
+ R GG HSVL + P Y+K +D++++VL PCQ
Sbjct: 53 LQRCGGHHSVLTNLPCSRVYDK-ADMMLNVLLPCQ 86
>12_01_0475 - 3722903-3723526,3724028-3724272,3725522-3725771
Length = 372
Score = 29.5 bits (63), Expect = 3.2
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Query: 77 GESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAGLGAGGHRTSEA 136
G S A+VL N ++ ++ IT N SG+ + E ++ NA Y G+ A + T A
Sbjct: 173 GPSRAVVLINPVMFEVDLKVITHNNSGLPLSESEEDDKVLSYNAFFYDGV-AHMNNTGFA 231
Query: 137 KKSFREAVHLVLK 149
++S H ++
Sbjct: 232 RRSVESTEHSTME 244
>03_05_0364 +
23495069-23495483,23496056-23496136,23496381-23496449,
23496778-23496883,23497461-23497491
Length = 233
Score = 29.1 bits (62), Expect = 4.3
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Query: 70 AAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAGLGAG 129
AA ++ NG N + + Q ++QR ++ SG + TG A + G G
Sbjct: 49 AAEQYNNGGCNLQQQQRLHQPS-QIQRFKKSASGGSPVCSGGATGTGGVAAARSGNGGGG 107
Query: 130 GHRTSEAKK 138
G R+S A +
Sbjct: 108 GKRSSRAPR 116
>01_05_0471 +
22535477-22535609,22535714-22535808,22535929-22536050,
22536165-22536702,22536774-22538105
Length = 739
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 1/49 (2%)
Query: 53 ATHGLLSHKMKEAYMSLAAIKFTNG-ESNALVLENVEQAQIRVQRITEN 100
ATHG L +M+E ++ NG + LVLE + ++ ++ IT N
Sbjct: 52 ATHGALEAEMREIFVPFRGFCTRNGVHVSELVLEEADVSKALIEFITVN 100
>02_01_0238 - 1576211-1576759,1577315-1577664,1578684-1578816
Length = 343
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/127 (19%), Positives = 57/127 (44%), Gaps = 2/127 (1%)
Query: 2 NIENRYQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHK 61
+++ R V + + + ++ + + E + RK++ L + RQVA E+ + + H
Sbjct: 171 DVKQRQMVEFLASLERGVGKKLKEKELEVEAMNRKSKELNEQIRQVALEVQSWQSVALHN 230
Query: 62 MKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNAL 121
A + + S+ L E +++ ++NV+ V + ++ G+ N++
Sbjct: 231 QSVANSMKSKLMQMVAHSSNLTREGSGDSEVDNTASSQNVNAVPGVFFQS-GLLGI-NSM 288
Query: 122 QYAGLGA 128
GLGA
Sbjct: 289 ADGGLGA 295
>11_04_0470 -
18092681-18092695,18092725-18092811,18093528-18093593,
18093696-18093740,18093850-18093903,18093987-18094082,
18094161-18094241,18095634-18095714,18095798-18095884,
18095976-18096074,18096644-18096769,18098162-18098248,
18098321-18098389,18098711-18098806,18099053-18099169,
18099710-18099790,18099873-18100010,18100307-18100580,
18100735-18100830,18101612-18101757,18102883-18103141,
18103434-18103537,18103623-18103748,18103872-18103982,
18104200-18104304
Length = 881
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 16 LKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASEL 51
L+EI R Q+ DR Y +++R E L I+ A E+
Sbjct: 511 LREISRMQKGSDRSYSVIERLEENLEIQSTFDAYEV 546
>07_01_0907 - 7636725-7637681
Length = 318
Score = 28.3 bits (60), Expect = 7.5
Identities = 14/31 (45%), Positives = 18/31 (58%), Gaps = 1/31 (3%)
Query: 102 SGVTTTYLEAVEETGVTNALQYAGLGAGGHR 132
S TTT +E G+ +LQ+ G G GGHR
Sbjct: 255 SAATTTASSPIEFLGLRGSLQFWG-GGGGHR 284
>06_01_0741 -
5510159-5510581,5510862-5511124,5511223-5511400,
5511411-5511698,5511801-5511899,5511973-5512440,
5512559-5512744,5512887-5513004,5513035-5513228
Length = 738
Score = 27.9 bits (59), Expect = 9.9
Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)
Query: 76 NGESNALVLENVEQAQIRVQRITENVSGVTTTYLE--AVEETGVTNALQ----YAGLGAG 129
NG S ++NV A + R+ ++V+ T++E VEE N L +G G
Sbjct: 422 NGYSKVYAMDNVPHAMVFWFRLADDVAHARVTWVEHMEVEEKSPINVLYRDLVLSGAAFG 481
Query: 130 GHR 132
HR
Sbjct: 482 AHR 484
>03_06_0582 -
34891613-34891795,34892407-34892466,34893134-34893280,
34893502-34893657,34893745-34893828,34893907-34893995,
34894575-34894689,34894776-34894899,34895080-34895219,
34895868-34895929,34896042-34896108,34896185-34896295,
34896868-34896945,34897074-34897274,34897492-34897563,
34897630-34897693,34898084-34898154,34898328-34898474
Length = 656
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 120 ALQYAGLGAGGHRTSEAKKSFREAVHLVL 148
A YAG GAGG +S A F+ V L+L
Sbjct: 15 AAAYAGFGAGGATSSSAISRFQNDVALLL 43
Database: rice
Posted date: Oct 3, 2007 3:31 PM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.133 0.378
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,273,158
Number of Sequences: 37544
Number of extensions: 252675
Number of successful extensions: 706
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 701
Number of HSP's gapped (non-prelim): 10
length of query: 285
length of database: 14,793,348
effective HSP length: 81
effective length of query: 204
effective length of database: 11,752,284
effective search space: 2397465936
effective search space used: 2397465936
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)
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