GeneModel BLAST Result against nematostella

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001592-TA|BGIBMGA001592-PA|IPR002699|ATPase, V1/A1
complex, subunit D
         (285 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)              93   2e-19
SB_35649| Best HMM Match : M (HMM E-Value=6e-09)                       33   0.35 
SB_22640| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)                     31   1.1  
SB_57303| Best HMM Match : ATP-cone (HMM E-Value=2)                    31   1.4  
SB_10093| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1)                     30   2.5  
SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.3  
SB_31942| Best HMM Match : TolA (HMM E-Value=0.36)                     29   3.3  
SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)                   29   3.3  
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)                    29   4.4  
SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.8  
SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)                     28   7.6  

>SB_17503| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 135

 Score = 93.5 bits (222), Expect = 2e-19
 Identities = 48/105 (45%), Positives = 72/105 (68%), Gaps = 2/105 (1%)

Query: 99  ENVSGVTTTYLEAVEETGVTNALQYAGLGAGGHRTSEAKKSFREAVHLVLKLASLRKTCV 158
           +NV+GV     E V +   TN+ +  GL  GG + S+ ++ + +AV L+++LASL+ + V
Sbjct: 4   DNVAGVLLPIFEPVSDG--TNSYELTGLSRGGQQLSKCQEVYGKAVKLLVELASLQTSFV 61

Query: 159 LLDEAIRIAWRKVNGIEKVIMPKLRNTEHYILVEIDECEREEFHR 203
            LDEAI++  R+VN IE VI+P++ NT  YIL E+DE EREEF+R
Sbjct: 62  TLDEAIKLTNRRVNAIEHVIIPRIENTVSYILGELDEREREEFYR 106


>SB_35649| Best HMM Match : M (HMM E-Value=6e-09)
          Length = 1279

 Score = 32.7 bits (71), Expect = 0.35
 Identities = 50/201 (24%), Positives = 91/201 (45%), Gaps = 22/201 (10%)

Query: 16  LKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFT 75
           L+ +K  ++ V   Y  LK++ E  ++   +   EL+     L+   K+ +M    IK  
Sbjct: 148 LQHMKAEKDKVQAAYNALKKQWEEHKLTCNKSNQELVNKVKSLNDD-KQKHMK--QIKLL 204

Query: 76  NGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQ-YAGLGAGG---H 131
             +  AL  E+ E+A+ RV  +TE  +G+  T  E  +E  + +  +  AG+        
Sbjct: 205 TEQKRALK-ESSEEAKRRVASLTEERNGLEKTNNE--QEAAIRDVNERIAGIEEEKRTLQ 261

Query: 132 RTSEAKKSFREAVHLVLKLASLRKTCVLLD---EAIRIAWR-------KVNGIEKVIMPK 181
           R    + + R A+H    L+++ +T   ++   E + +  R        V G+ K+I  K
Sbjct: 262 RQVATQANERSALH--SDLSAVNETAQNIEREREELELKLRGSEEEDSTVQGMIKIIEDK 319

Query: 182 LRNTEHYILVEIDECEREEFH 202
           L+ TE  +  +  E ER E H
Sbjct: 320 LQATESMVQEQSGERERLEGH 340


>SB_22640| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 345

 Score = 32.3 bits (70), Expect = 0.47
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 3/73 (4%)

Query: 15  MLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKF 74
           +L  +KRRQ   ++GYE    K E L +       + +     +SH+MK+    +  I+ 
Sbjct: 90  LLLSVKRRQSKDNKGYEY---KQEVLGVVDTTFKFDNLVDFQYVSHEMKDPLDQVRGIEI 146

Query: 75  TNGESNALVLENV 87
            N E   LVL  V
Sbjct: 147 LNEEQPLLVLPPV 159


>SB_19059| Best HMM Match : Arm (HMM E-Value=0.044)
          Length = 603

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 3/65 (4%)

Query: 40  LRIKGRQVASELIATHGLLSHKMK--EAYMSLAAIKFTNGESNALVLENVEQAQIRVQRI 97
           L  K  +  S+L  T G LS  +    AY SL A K +N + +    EN+E   ++V R+
Sbjct: 437 LTSKSDEARSQLFNTKGCLSTLLSILVAYFSLDA-KVSNKDKSESRSENIEDVLVKVIRV 495

Query: 98  TENVS 102
             N+S
Sbjct: 496 IANLS 500


>SB_57303| Best HMM Match : ATP-cone (HMM E-Value=2)
          Length = 150

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 15/32 (46%), Positives = 24/32 (75%), Gaps = 1/32 (3%)

Query: 20  KRRQEHVDRGYELLKRKAEGLRIKGRQVASEL 51
           + +++HVD+   L+K KA+ L I+ RQ+ASEL
Sbjct: 112 QHKKDHVDKRENLVKLKAQ-LNIRRRQLASEL 142


>SB_10093| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 149

 Score = 30.3 bits (65), Expect = 1.9
 Identities = 17/45 (37%), Positives = 26/45 (57%)

Query: 9  VTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIA 53
          V ++ F   E+K R+  + + Y LL + AE   +KGRQ + EL A
Sbjct: 31 VNSAHFNPSEMKERKLTLSQAYCLLWQDAESGNVKGRQTSCELQA 75


>SB_47446| Best HMM Match : DUF16 (HMM E-Value=4.1)
          Length = 371

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 2/55 (3%)

Query: 231 SVLDSKPLVLSYEKSSDVLMSVLHPCQSLTSSSVSFGDCKPICYPHNWDDDDLLF 285
           S+ DS  L++SY+        VLH  +S    S+   D + +C   +W+ D LLF
Sbjct: 31  SLQDSSFLIISYDHQQRAQPLVLHLSRSRLCKSIL--DTRCVCKRTDWECDWLLF 83


>SB_42352| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 749

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 21/75 (28%), Positives = 27/75 (36%), Gaps = 1/75 (1%)

Query: 71  AIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAGLGAGG 130
           AI F N     L L      Q  ++RI EN S       + V    +   L + G+G  G
Sbjct: 319 AIDFINDRDKPLALYIFSNKQESIKRIQENTSSGGFCANDVVIHAAL-ETLPFGGVGGSG 377

Query: 131 HRTSEAKKSFREAVH 145
                 K SF    H
Sbjct: 378 MGAYHGKHSFEAFTH 392


>SB_31942| Best HMM Match : TolA (HMM E-Value=0.36)
          Length = 589

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 22/87 (25%), Positives = 34/87 (39%)

Query: 86  NVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAGLGAGGHRTSEAKKSFREAVH 145
           N   A  RV  +T+  +G+      AV  T  T A       AG    +EAK++  EA  
Sbjct: 273 NASSAVQRVSNLTKQYAGIVAETETAVRNTEATLAAVKERENAGIEMLAEAKRALAEAEA 332

Query: 146 LVLKLASLRKTCVLLDEAIRIAWRKVN 172
            V   A   +  + + + +     K N
Sbjct: 333 AVATAAKAHRDALEMRQILLTFEAKAN 359


>SB_16338| Best HMM Match : PHD (HMM E-Value=3.8e-08)
          Length = 652

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 16/53 (30%), Positives = 29/53 (54%), Gaps = 3/53 (5%)

Query: 24  EHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTN 76
           E V  GY   +R  EG+R+    VA+EL+ T+ +   ++++  +    +KF N
Sbjct: 197 EGVHGGYGYGERNPEGVRLLDFAVANELVITNSMFQKRLRDPGIK---VKFLN 246


>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
          Length = 592

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 31/122 (25%), Positives = 55/122 (45%), Gaps = 7/122 (5%)

Query: 6   RYQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEA 65
           + ++ A   + +EI+R QE +DR  E   R+ E  RI+  +  SE +A    +  + +E 
Sbjct: 426 KQELIAQRKLEEEIRREQEKIDRELEEAARREEEERIRNME-ESERLALQEKMRREEEEL 484

Query: 66  YMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAG 125
              L   +    E    VLE  EQ ++R + +          +L     TG+   +++ G
Sbjct: 485 RRRLEDQR-RREEEERRVLE--EQKRLRQEALALLRQKRIKRHLFI---TGIMKEIRFLG 538

Query: 126 LG 127
           LG
Sbjct: 539 LG 540


>SB_52411| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 370

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 4/65 (6%)

Query: 34  KRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTNGESNALVLENVEQAQIR 93
           KRK + L  K R+    + + HG +  K +EA M      F  G+S  L+  +V    + 
Sbjct: 246 KRKVDWLTEKMREANFTVASMHGDMPQKEREAIMK----DFRAGQSRVLISTDVWARGLD 301

Query: 94  VQRIT 98
           VQ+++
Sbjct: 302 VQQVS 306


>SB_10624| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2193

 Score = 28.7 bits (61), Expect = 5.8
 Identities = 17/81 (20%), Positives = 37/81 (45%)

Query: 58   LSHKMKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGV 117
            L H++ +A    A+++    E+N  + +  E+A I  +R+TE  + +     + ++   +
Sbjct: 997  LEHELAKARKECASLRSQLDENNIRMRKATEEADILQRRVTELQALIDALNKDILDRDTI 1056

Query: 118  TNALQYAGLGAGGHRTSEAKK 138
             N L+      G    +  KK
Sbjct: 1057 INQLRSGSSNVGDEINALKKK 1077


>SB_9884| Best HMM Match : zf-BED (HMM E-Value=2.8)
          Length = 129

 Score = 28.3 bits (60), Expect = 7.6
 Identities = 14/61 (22%), Positives = 32/61 (52%), Gaps = 1/61 (1%)

Query: 42  IKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQRI-TEN 100
           +K   V +  + TH + +H +K   + +  +K  N +++ + + NV+   ++V  + T N
Sbjct: 52  VKTHNVKTHNVKTHNVKAHNVKVHNVKVHNVKAHNVKTHNVKVHNVKAHNVKVHNVKTHN 111

Query: 101 V 101
           V
Sbjct: 112 V 112


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,351,783
Number of Sequences: 59808
Number of extensions: 281844
Number of successful extensions: 728
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 719
Number of HSP's gapped (non-prelim): 16
length of query: 285
length of database: 16,821,457
effective HSP length: 81
effective length of query: 204
effective length of database: 11,977,009
effective search space: 2443309836
effective search space used: 2443309836
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 60 (28.3 bits)