GeneModel BLAST Result against celegans

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001592-TA|BGIBMGA001592-PA|IPR002699|ATPase, V1/A1
complex, subunit D
         (285 letters)

Database: celegans 
           27,539 sequences; 12,573,161 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical pr...   146   2e-35
U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical pr...    29   5.0  
AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical ...    29   5.0  
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ...    28   6.6  
AC024826-1|AAY86307.1|  221|Caenorhabditis elegans Egr (early gr...    28   6.6  

>Z27080-1|CAA81600.1|  257|Caenorhabditis elegans Hypothetical
           protein F55H2.2 protein.
          Length = 257

 Score =  146 bits (354), Expect = 2e-35
 Identities = 78/200 (39%), Positives = 121/200 (60%), Gaps = 2/200 (1%)

Query: 4   ENRYQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMK 63
           ++R  V  S      +K R +   +G+ LLK+KA+ L ++ R +  +++    L+   MK
Sbjct: 6   KDRIAVFPSRMAQTLMKTRLKGAQKGHSLLKKKADALNLRFRDILRKIVENKVLMGEVMK 65

Query: 64  EAYMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQY 123
           EA  SLA  KFT G+ +  V++NV QAQ RV+   ENV GV     +A ++    +A   
Sbjct: 66  EAAFSLAEAKFTAGDFSHTVIQNVSQAQYRVRMKKENVVGVFLPVFDAYQDG--PDAYDL 123

Query: 124 AGLGAGGHRTSEAKKSFREAVHLVLKLASLRKTCVLLDEAIRIAWRKVNGIEKVIMPKLR 183
            GLG GG   +  KK++ +A+ L+++LA+L+   + LDEAI++  R+VN IE VI+P++ 
Sbjct: 124 TGLGKGGANIARLKKNYNKAIELLVELATLQTCFITLDEAIKVTNRRVNAIEHVIIPRIE 183

Query: 184 NTEHYILVEIDECEREEFHR 203
           NT  YI+ E+DE EREEF R
Sbjct: 184 NTLTYIVTELDEMEREEFFR 203


>U39849-4|AAA81047.1|  349|Caenorhabditis elegans Hypothetical
           protein C06A8.6 protein.
          Length = 349

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 15/47 (31%), Positives = 27/47 (57%), Gaps = 1/47 (2%)

Query: 60  HKMKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQRITENVSGVTT 106
           H +KE Y++   IK+  G    L LE ++  Q R++++ EN+  + T
Sbjct: 208 HNLKEIYLAQNGIKYVCGIDEHLPLEILDFNQNRLEKV-ENIHQLKT 253


>AF040657-1|AAB95054.1|  758|Caenorhabditis elegans Hypothetical
           protein T20H9.6 protein.
          Length = 758

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 16/63 (25%), Positives = 29/63 (46%), Gaps = 3/63 (4%)

Query: 40  LRIKGRQVASELIATHGLLSHK---MKEAYMSLAAIKFTNGESNALVLENVEQAQIRVQR 96
           ++I    +   L+    LLS K   +KE Y  +  +K    + N+ +  +   AQI V  
Sbjct: 426 VKISEMDIMESLLHNMTLLSSKISTLKELYKLMNTLKIEENQKNSFIKNSKNSAQIEVNS 485

Query: 97  ITE 99
           ++E
Sbjct: 486 LSE 488


>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
           protein F54G2.2 protein.
          Length = 1023

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 15/40 (37%), Positives = 26/40 (65%), Gaps = 2/40 (5%)

Query: 133 TSEAKKSFREAVHLVLKLASLRKTCVLLDEAIRIAWRKVN 172
           T++AKK +  A   +L+  S+   C+ LDE  RIA+++V+
Sbjct: 416 TAKAKKKW--ATIKILENQSIEDFCLKLDEIARIAYKRVD 453


>AC024826-1|AAY86307.1|  221|Caenorhabditis elegans Egr (early
           growth factor responsefactor) homolog protein 2 protein.
          Length = 221

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 21/61 (34%), Positives = 34/61 (55%), Gaps = 5/61 (8%)

Query: 224 NRQGGDHSVLDSKPLVLSYEKSSDVLMSVLHPCQSLTSSSVSFG-DCKPI-CYPHNWDDD 281
           N+ G   SV+DSK + L+Y++ SD   S  H   S ++S   F    +P+  Y +N+ D+
Sbjct: 88  NKAGVPESVVDSKTVGLNYQEPSD---SKTHTSFSDSASLAHFELKTEPMDDYSYNFSDN 144

Query: 282 D 282
           D
Sbjct: 145 D 145


  Database: celegans
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 12,573,161
  Number of sequences in database:  27,539
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,124,467
Number of Sequences: 27539
Number of extensions: 213024
Number of successful extensions: 513
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 511
Number of HSP's gapped (non-prelim): 5
length of query: 285
length of database: 12,573,161
effective HSP length: 81
effective length of query: 204
effective length of database: 10,342,502
effective search space: 2109870408
effective search space used: 2109870408
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)