GeneModel BLAST Result against arabidopsis

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001592-TA|BGIBMGA001592-PA|IPR002699|ATPase, V1/A1
complex, subunit D
         (285 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) ...   125   4e-29
At1g03180.1 68414.m00295 hypothetical protein                          28   6.2  
At4g28000.1 68417.m04016 AAA-type ATPase family protein contains...    28   8.2  
At2g37280.1 68415.m04573 ABC transporter family protein similar ...    28   8.2  
At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1) ident...    28   8.2  
At1g66110.1 68414.m07503 hypothetical protein contains Pfam prof...    28   8.2  

>At3g58730.1 68416.m06546 vacuolar ATP synthase subunit D (VATD) /
           V-ATPase D subunit / vacuolar proton pump D subunit
           (VATPD) identical to Vacuolar ATP synthase subunit D (EC
           3.6.3.14) (V-ATPase D subunit) (Vacuolar proton pump D
           subunit) (Swiss-Prot:Q9XGM1) [Arabidopsis thaliana]
          Length = 261

 Score =  125 bits (301), Expect = 4e-29
 Identities = 68/199 (34%), Positives = 116/199 (58%), Gaps = 3/199 (1%)

Query: 6   RYQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEA 65
           R  V  ++ ML  +K R     RG+ LLK+K++ L ++ R +  +++     +   MK +
Sbjct: 7   RLNVVPTVTMLGVMKARLVGATRGHALLKKKSDALTVQFRALLKKIVTAKESMGDMMKTS 66

Query: 66  YMSLAAIKFTNGES-NALVLENVEQAQIRVQRITENVSGVTTTYLEAVEETGVTNALQYA 124
             +L  +K+  G++   +VLENV++A ++V+  TEN++GV     +   E    N L   
Sbjct: 67  SFALTEVKYVAGDNVKHVVLENVKEATLKVRSRTENIAGVKLPKFDHFSEGETKNDL--T 124

Query: 125 GLGAGGHRTSEAKKSFREAVHLVLKLASLRKTCVLLDEAIRIAWRKVNGIEKVIMPKLRN 184
           GL  GG +    + ++ +A+ ++++LASL+ + + LDEAI+   R+VN +E V+ PKL N
Sbjct: 125 GLARGGQQVRACRVAYVKAIEVLVELASLQTSFLTLDEAIKTTNRRVNALENVVKPKLEN 184

Query: 185 TEHYILVEIDECEREEFHR 203
           T  YI  E+DE ERE+F R
Sbjct: 185 TISYIKGELDELEREDFFR 203


>At1g03180.1 68414.m00295 hypothetical protein
          Length = 275

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 14/39 (35%), Positives = 23/39 (58%)

Query: 141 REAVHLVLKLASLRKTCVLLDEAIRIAWRKVNGIEKVIM 179
           RE  + + KL  L KT   L  A+++  R+  GI+KV++
Sbjct: 89  REVKNEIKKLEKLMKTISSLRSALQLMIREAPGIQKVVL 127


>At4g28000.1 68417.m04016 AAA-type ATPase family protein contains
           Pfam domain, PF00004: ATPase, AAA family
          Length = 726

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 23/86 (26%), Positives = 39/86 (45%), Gaps = 1/86 (1%)

Query: 30  YELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAIKFTNGESNALVLENVEQ 89
           Y L+  K    +  GR V S    +HGL   +  +     +    TN +S  +  +N  +
Sbjct: 338 YHLMNNKEPEYK-NGRLVISSNSLSHGLNILQEGQGCFEDSLKLDTNIDSKEVAPDNEFE 396

Query: 90  AQIRVQRITENVSGVTTTYLEAVEET 115
            +IR + I  N  GVT   + +++ET
Sbjct: 397 KRIRPEVIPANEIGVTFADIGSLDET 422


>At2g37280.1 68415.m04573 ABC transporter family protein similar to
           PDR5-like ABC transporter GI:1514643 from [Spirodela
           polyrhiza]
          Length = 1413

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 31/129 (24%), Positives = 57/129 (44%), Gaps = 8/129 (6%)

Query: 12  SLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGL--LSHKMKEAYMSL 69
           +L +LK+I+RR E V   +  ++ + E L   G + A E++    L  L + +K  ++ L
Sbjct: 83  NLKLLKKIRRRMERVGVEFPSIEVRYEHL---GVEAACEVVEGKALPTLWNSLKHVFLDL 139

Query: 70  AAIK-FTNGESNALVLENVEQ--AQIRVQRITENVSGVTTTYLEAVEETGVTNALQYAGL 126
             +      E+N  +L +V    +  R+  +        TT L+A+      N   Y  +
Sbjct: 140 LKLSGVRTNEANIKILTDVSGIISPGRLTLLLGPPGCGKTTLLKALSGNLENNLKCYGEI 199

Query: 127 GAGGHRTSE 135
              GH  +E
Sbjct: 200 SYNGHGLNE 208


>At1g67370.1 68414.m07669 meiotic asynaptic mutant 1 (ASY1)
           identical to meiotic asynaptic mutant 1 [Arabidopsis
           thaliana] GI:7939627; contains Pfam profiles PF02301:
           DNA-binding HORMA domain, PF04433: SWIRM domain
          Length = 596

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 16/63 (25%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 19  IKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLLSHKMKEAYMSLAAI-KFTNG 77
           IK+R +  +  +  +K +A+G    G+ VA E       L H +   Y+++  +    +G
Sbjct: 359 IKKRDKTPESEFTFVKEEADGQISPGKSVAPEDYLYMKALYHSLPMKYVTITKLHNMLDG 418

Query: 78  ESN 80
           E+N
Sbjct: 419 EAN 421


>At1g66110.1 68414.m07503 hypothetical protein contains Pfam profile
           PF04510: Family of unknown function (DUF577)
          Length = 338

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 12/52 (23%), Positives = 29/52 (55%)

Query: 7   YQVTASLFMLKEIKRRQEHVDRGYELLKRKAEGLRIKGRQVASELIATHGLL 58
           Y +  S++ +  +KRR+  V +G+  + +K     ++ R+   E+++  GL+
Sbjct: 250 YVIVKSIWEMVNVKRREIVVRKGFVRVAKKVRREALRFREAEYEVVSRLGLM 301


  Database: arabidopsis
    Posted date:  Oct 3, 2007  3:31 PM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.133    0.378 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,913,503
Number of Sequences: 28952
Number of extensions: 208988
Number of successful extensions: 524
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 6
length of query: 285
length of database: 12,070,560
effective HSP length: 80
effective length of query: 205
effective length of database: 9,754,400
effective search space: 1999652000
effective search space used: 1999652000
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
S2: 59 (27.9 bits)