GeneModel BLAST Result against bee

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001591-TA|BGIBMGA001591-PA|undefined
         (924 letters)

Database: bee 
           429 sequences; 140,377 total letters

Searching.....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    31   0.032
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          30   0.075
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                29   0.17 
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    27   0.53 
D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         24   6.5  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    24   6.5  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    24   6.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   8.6  

>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 31.5 bits (68), Expect = 0.032
 Identities = 20/87 (22%), Positives = 29/87 (33%)

Query: 676 QYMMQNSGALTVPNNNVQYTIPNTSPASANNGNGQTVVGDTDNTNGSGNQTTYITSSSQD 735
           +Y  QN+G     N N      N   A   N N Q      DN      Q     + ++ 
Sbjct: 421 RYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNGNRQNDNKQ 480

Query: 736 NGYSVPAGTLQGSQQNFSAEGSTATQG 762
           NG         G++QN + +      G
Sbjct: 481 NGNRQNDNKQNGNRQNGNKQNDNKQNG 507



 Score = 24.2 bits (50), Expect = 4.9
 Identities = 24/132 (18%), Positives = 38/132 (28%), Gaps = 8/132 (6%)

Query: 678 MMQNSGALTVPNNNVQYTIPNTSPASANNGNGQTVVGDTDNTNGSGNQTTYITSSSQDNG 737
           +M+N+      N N      +   A   N N Q       N      Q     + ++ NG
Sbjct: 413 LMRNTRCGRYHNQNAGNQNADNQNADNQNANNQNADNQNANKQNGNRQNDNRQNDNKQNG 472

Query: 738 YSVPAGTLQGSQQNFSAEGSTATQGTYTPVTQASTPGYGSTNGNQAGYISQTSTTQPPNY 797
                    G++QN + +      G        +       NGN+     +    Q  N 
Sbjct: 473 NRQNDNKQNGNRQNDNKQNGNRQNG--------NKQNDNKQNGNRQNDNKRNGNRQNDNQ 524

Query: 798 QTNGSNPPTPNQ 809
                N    NQ
Sbjct: 525 NNQNDNNRNDNQ 536


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 30.3 bits (65), Expect = 0.075
 Identities = 15/54 (27%), Positives = 22/54 (40%)

Query: 671 GSVQQQYMMQNSGALTVPNNNVQYTIPNTSPASANNGNGQTVVGDTDNTNGSGN 724
           G+V  +   +NS   T+   N      N +  + NN N      D  N NG+ N
Sbjct: 212 GAVVLETCQRNSNNSTITAGNANTNASNNNNNNNNNNNNNNGANDNGNGNGASN 265



 Score = 26.2 bits (55), Expect = 1.2
 Identities = 10/32 (31%), Positives = 15/32 (46%)

Query: 706 NGNGQTVVGDTDNTNGSGNQTTYITSSSQDNG 737
           N N  T+     NTN S N      +++ +NG
Sbjct: 222 NSNNSTITAGNANTNASNNNNNNNNNNNNNNG 253


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 0.17
 Identities = 33/142 (23%), Positives = 55/142 (38%), Gaps = 14/142 (9%)

Query: 716 TDNTNGSGNQTTYITSSSQDNGYS-VPAGTLQGSQQ--NFSAEGSTATQGTYTPVTQAST 772
           T +T GSG+    + +S  D+G S V + T  G  +  N   +       +  P   +  
Sbjct: 232 TTSTPGSGS----LPASPADSGVSDVESSTSSGGNEDANLLLKARLNPNSSLQPSLASHH 287

Query: 773 PGYGSTNGNQA----GYISQTSTTQPPNYQTNGSNPPTPNQNYTGATSSPQTSQSNFSPS 828
               S  G  A    G    T+   PP+Y  +  +P   +Q +    SSP     N +  
Sbjct: 288 SHLSSALGRSACHSPGVYPSTAGFLPPSYHPHQHHP---SQYHPHRGSSPHHQHGNHTMG 344

Query: 829 TTPAPNQSYPGQNLQSMQNVGF 850
            T  P   +     QS+Q++ +
Sbjct: 345 PTMGPPHHHHHHQTQSLQHLHY 366



 Score = 27.9 bits (59), Expect = 0.40
 Identities = 22/77 (28%), Positives = 36/77 (46%), Gaps = 11/77 (14%)

Query: 773 PGYGSTNGNQAGYISQTSTTQPPNY----QTNG------SNPPTPNQNYTGATSSPQTSQ 822
           P  GS+  +Q G  +   T  PP++    QT          PPT +++Y+   +S   S 
Sbjct: 328 PHRGSSPHHQHGNHTMGPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASG 387

Query: 823 SNFSPSTTPAPNQSYPG 839
           + F+   TP+P +  PG
Sbjct: 388 AQFATPCTPSPPRG-PG 403


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 27.5 bits (58), Expect = 0.53
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 764 YTPVTQASTPGYGSTNGNQAGYISQTSTT--QPPNYQTNGSNPPTPNQNYTGATSSPQTS 821
           ++ V QA   G        +GY    ST     P  +TN S  P+PN     A SS  +S
Sbjct: 470 FSAVAQAQLGGERQNGRKDSGYDGAASTAVIHEPVVETNSS--PSPNPRIASAPSSSTSS 527



 Score = 25.0 bits (52), Expect = 2.8
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 11/61 (18%)

Query: 777 STNGNQAGYISQTS---TTQPPNYQTNGSNPPTPNQNYTGATSSPQTSQSNFSPSTTPAP 833
           S+ G + G+ + ++   T+  P+Y   GS+ P+P        SSP +  S+ SP++  + 
Sbjct: 60  SSGGVELGWFNDSAAAITSTSPSYPGGGSSSPSP--------SSPSSFFSSVSPTSLGSE 111

Query: 834 N 834
           N
Sbjct: 112 N 112


>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 225 VTQLRLSGVPSSMSML 240
           VT LR +GVPSS++++
Sbjct: 78  VTMLRYNGVPSSLNVI 93


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 225 VTQLRLSGVPSSMSML 240
           VT LR +GVPSS++++
Sbjct: 78  VTMLRYNGVPSSLNVI 93


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.8 bits (49), Expect = 6.5
 Identities = 9/16 (56%), Positives = 14/16 (87%)

Query: 225 VTQLRLSGVPSSMSML 240
           VT LR +GVPSS++++
Sbjct: 78  VTMLRYNGVPSSLNVI 93


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 8.6
 Identities = 25/101 (24%), Positives = 39/101 (38%), Gaps = 13/101 (12%)

Query: 719 TNGSGNQTTYITSSSQDNGYSVPAGTLQGSQQNF----SAEG-----STATQGTYTPVTQ 769
           T  S NQ  Y  +  +      P  T+ GS +      + EG     ++A +   +P+  
Sbjct: 538 TPPSYNQLNYNENIERFFKSKPPVATMYGSDEEIINSSNDEGGKTSPNSAVRKCMSPING 597

Query: 770 ASTPGYGSTNGNQAGYISQTSTTQPPNYQTNGS----NPPT 806
           +   G GS     +G  +QTS+    N     S     PPT
Sbjct: 598 SGASGSGSAENLSSGSNNQTSSASRENTSNTTSMESFKPPT 638


  Database: bee
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 140,377
  Number of sequences in database:  429
  
Lambda     K      H
   0.309    0.125    0.356 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 230,181
Number of Sequences: 429
Number of extensions: 10648
Number of successful extensions: 27
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 11
Number of HSP's gapped (non-prelim): 15
length of query: 924
length of database: 140,377
effective HSP length: 64
effective length of query: 860
effective length of database: 112,921
effective search space: 97112060
effective search space used: 97112060
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (21.7 bits)
S2: 48 (23.4 bits)