GeneModel BLAST Result against tribolium

BLASTP 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= BGIBMGA001590-TA|BGIBMGA001590-PA|IPR002653|Zinc finger,
A20-type
         (509 letters)

Database: tribolium 
           317 sequences; 114,650 total letters

Searching....................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D pro...    25   1.2  
U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II p...    23   3.8  
DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    23   6.6  

>EF125547-1|ABL73931.1|  255|Tribolium castaneum obstractor D
           protein.
          Length = 255

 Score = 25.0 bits (52), Expect = 1.2
 Identities = 25/101 (24%), Positives = 38/101 (37%), Gaps = 12/101 (11%)

Query: 151 LSGEYG-ETITNAIRRRWRWSESASLCAAGLVPSEGEWAREWRE----ADYH----GDPI 201
           L G +G ET        W  + +  LC  GL+ +E   + +W E       H     DP 
Sbjct: 102 LYGIFGHETSCTRYWTCWNGTATEQLCIGGLLYNERTHSCDWPENVDGCQKHPLCNDDPN 161

Query: 202 APIPFG---GVYLPLELDPAQCSRAPVLLAYDAGHFSALVP 239
             +P G     Y   +    +  R P +L +D      +VP
Sbjct: 162 GNVPLGKSCNRYWQCQGGYPRLQRCPAMLVFDRRSLRCVVP 202


>U04271-2|AAA03709.1|  490|Tribolium castaneum alpha-amylase II
           protein.
          Length = 490

 Score = 23.4 bits (48), Expect = 3.8
 Identities = 7/16 (43%), Positives = 10/16 (62%)

Query: 167 WRWSESASLCAAGLVP 182
           W+WS+ A +C   L P
Sbjct: 36  WKWSDIADVCERFLAP 51


>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.6 bits (46), Expect = 6.6
 Identities = 7/14 (50%), Positives = 11/14 (78%)

Query: 208  GVYLPLELDPAQCS 221
            G YLP ++DP+ C+
Sbjct: 2338 GKYLPSDIDPSLCT 2351


  Database: tribolium
    Posted date:  Oct 5, 2007 11:13 AM
  Number of letters in database: 114,650
  Number of sequences in database:  317
  
Lambda     K      H
   0.317    0.133    0.412 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 121,635
Number of Sequences: 317
Number of extensions: 5162
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 4
Number of HSP's gapped (non-prelim): 6
length of query: 509
length of database: 114,650
effective HSP length: 60
effective length of query: 449
effective length of database: 95,630
effective search space: 42937870
effective search space used: 42937870
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)
S2: 45 (22.2 bits)